miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 3102 0.73 1
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 3475 0.84 0.983847
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 5212 0.66 1
Target:  5'- -aGUgaGUAUAUcGCUUAGGUguuaggUAGAa -3'
miRNA:   3'- aaCAaaCAUAUAuCGAAUCCAa-----AUUU- -5'
28291 5' -38.3 NC_005902.1 + 5415 0.73 1
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 5688 0.83 0.992192
Target:  5'- --aUUUGUAUAUAGCUUAGGggUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 6220 0.66 1
Target:  5'- gUUGUgaaugaGUAUAUAGCUUAGuugUUAAAg -3'
miRNA:   3'- -AACAaa----CAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 6346 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUUUu-- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAAAuuu -5'
28291 5' -38.3 NC_005902.1 + 7673 0.83 0.992192
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 8211 0.74 0.999999
Target:  5'- ---cUUGUAUAUAGCUUAGGcaaagUUAAu -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCa----AAUUu -5'
28291 5' -38.3 NC_005902.1 + 10152 0.68 1
Target:  5'- ---cUUGUAUAUAGCUcAGGUc---- -3'
miRNA:   3'- aacaAACAUAUAUCGAaUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 10282 0.69 1
Target:  5'- ---cUUGUAUAUAGCUUGGaGUa---- -3'
miRNA:   3'- aacaAACAUAUAUCGAAUC-CAaauuu -5'
28291 5' -38.3 NC_005902.1 + 10423 0.68 1
Target:  5'- cUUGUUUGUAUAcGGCUUAcGUaUUAAAg -3'
miRNA:   3'- -AACAAACAUAUaUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 11068 0.67 1
Target:  5'- --aUUUGUAUAUAGCUUAaGUgUUAGAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 11449 0.74 0.999998
Target:  5'- -----cGUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 13226 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 15188 0.74 0.999999
Target:  5'- -aGUUUGUAUAUAGCUUacauguuaaaGGGUa---- -3'
miRNA:   3'- aaCAAACAUAUAUCGAA----------UCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 15341 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 15500 0.71 1
Target:  5'- aUGUgagUGUAuaUAUAGUUUAGGUgUUAAAa -3'
miRNA:   3'- aACAa--ACAU--AUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 16919 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 18886 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.