miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 29605 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 45115 0.83 0.992192
Target:  5'- cUUGUUcGUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 125569 0.8 0.998785
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 163428 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 136082 0.93 0.745512
Target:  5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 162625 0.92 0.756745
Target:  5'- cUUGUUUGUAUAUAGCUUGGGUg---- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 30823 0.84 0.979066
Target:  5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 63393 0.84 0.979066
Target:  5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 52364 0.84 0.983847
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 5688 0.83 0.992192
Target:  5'- --aUUUGUAUAUAGCUUAGGggUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 142021 0.83 0.987752
Target:  5'- aUGcgUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aACaaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 3475 0.84 0.983847
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 39301 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 80773 0.83 0.989407
Target:  5'- -aGUggGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 154619 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 131146 0.84 0.981573
Target:  5'- aUGUucuuUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 7673 0.83 0.992192
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 99649 0.82 0.995246
Target:  5'- ---cUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 92196 0.96 0.616195
Target:  5'- aUUGUUUGUAUAUAGCUUAGGUaUUAAAu -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 110132 0.85 0.976315
Target:  5'- cUUGcUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- -AACaAACAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.