miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 184889 0.85 0.973307
Target:  5'- cUUGUUUGUAUAcAGCUUAGGUcUUAAAg -3'
miRNA:   3'- -AACAAACAUAUaUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 184631 0.75 0.999991
Target:  5'- -----cGUAUAUAGCUUAGGggUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 182962 0.7 1
Target:  5'- -aGUguaUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 182658 0.74 0.999999
Target:  5'- aUGUUguaUGUAUAGCUUAGGUgUAAc -3'
miRNA:   3'- aACAAac-AUAUAUCGAAUCCAaAUUu -5'
28291 5' -38.3 NC_005902.1 + 181266 0.72 1
Target:  5'- --aUUUGUAUAUAGCgUAGGgUUAAAa -3'
miRNA:   3'- aacAAACAUAUAUCGaAUCCaAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 179724 0.83 0.989407
Target:  5'- --aUUUGUAUAUGGCUUAGGUcUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 177624 0.78 0.999713
Target:  5'- --aUUUGUAUAUAGUUUAGGUgUAAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 174635 0.69 1
Target:  5'- -----aGUAUAUAGCUUAaGUUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCAAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 174500 0.73 1
Target:  5'- uUUGUUUGUAUAUAGCUUAa------- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUccaaauuu -5'
28291 5' -38.3 NC_005902.1 + 173493 0.73 1
Target:  5'- cUUGUUUGUAUAUAaUUUAGGUaUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 172855 0.8 0.999027
Target:  5'- aUGg--GUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aACaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 170615 0.68 1
Target:  5'- --aUUUaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 169577 0.7 1
Target:  5'- -----aGUGUAUAGUUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 169147 0.72 1
Target:  5'- uUUGUUUGauaugcuuacuugAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACa------------UAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 167185 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 165973 0.79 0.999628
Target:  5'- cUUGUUUGUAUAUGGCUUauguguuaaaGGGUUa--- -3'
miRNA:   3'- -AACAAACAUAUAUCGAA----------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 163428 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 162779 0.74 1
Target:  5'- gUGUgaaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aACAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 162754 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 162625 0.92 0.756745
Target:  5'- cUUGUUUGUAUAUAGCUUGGGUg---- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAaauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.