miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 162433 0.8 0.999027
Target:  5'- ----gUGUGUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 159543 0.73 1
Target:  5'- cUUGUUUGUAUAUAGCa---GUUUAGAu -3'
miRNA:   3'- -AACAAACAUAUAUCGaaucCAAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 157888 0.68 1
Target:  5'- ------uUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 157209 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 157061 0.9 0.840028
Target:  5'- -cGUUUGUGUAUAGCUUAGGUg---- -3'
miRNA:   3'- aaCAAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 156822 0.73 1
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 156763 0.77 0.999964
Target:  5'- -cGUUUGUAUAUGGCUUAGauUUUAAu -3'
miRNA:   3'- aaCAAACAUAUAUCGAAUCc-AAAUUu -5'
28291 5' -38.3 NC_005902.1 + 155244 0.66 1
Target:  5'- -----cGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 154951 0.66 1
Target:  5'- ---cUUGUucAUAGCUUGGGUgUUAAAa -3'
miRNA:   3'- aacaAACAuaUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 154619 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 153062 0.71 1
Target:  5'- -aGUgaGUAUAUAGUUUAGGUg---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 149872 0.69 1
Target:  5'- cUUGUUUaUAUAUAGCUUAGaugUUAAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 149077 0.74 0.999999
Target:  5'- -----aGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 147629 0.66 1
Target:  5'- -aGUgaGUGUAUAGCUUAGaugUUAAu -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCca-AAUUu -5'
28291 5' -38.3 NC_005902.1 + 146938 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 146633 0.74 0.999998
Target:  5'- -----cGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 145066 0.87 0.933165
Target:  5'- aUGUgagUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aACAa--ACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 144055 0.79 0.999628
Target:  5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAc -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 143800 0.83 0.989407
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAGa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 142305 0.74 0.999998
Target:  5'- uUUGUUUGUAUAUAGCUUaaauaaAGGa----- -3'
miRNA:   3'- -AACAAACAUAUAUCGAA------UCCaaauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.