miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 94180 0.84 0.983847
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 28810 0.84 0.985903
Target:  5'- --uUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 138801 0.83 0.987752
Target:  5'- -aGUgUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 142021 0.83 0.987752
Target:  5'- aUGcgUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aACaaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 80773 0.83 0.989407
Target:  5'- -aGUggGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 179724 0.83 0.989407
Target:  5'- --aUUUGUAUAUGGCUUAGGUcUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 143800 0.83 0.989407
Target:  5'- --aUUUGUAUAUAGCUUAGGUgUUAAGa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 87404 0.83 0.990883
Target:  5'- ---cUUGUAUAUAGCUUAGGUaUGAAg -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 7673 0.83 0.992192
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 45115 0.83 0.992192
Target:  5'- cUUGUUcGUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 5688 0.83 0.992192
Target:  5'- --aUUUGUAUAUAGCUUAGGggUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 99649 0.82 0.995246
Target:  5'- ---cUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 69408 0.82 0.995246
Target:  5'- ---cUUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 131165 0.81 0.996015
Target:  5'- gUGUUgaGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aACAAa-CAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 125569 0.8 0.998785
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 162433 0.8 0.999027
Target:  5'- ----gUGUGUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 172855 0.8 0.999027
Target:  5'- aUGg--GUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aACaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 50082 0.79 0.999226
Target:  5'- ---cUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 114434 0.79 0.999226
Target:  5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 23648 0.79 0.999226
Target:  5'- -aGUgaGUAUGUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.