Results 41 - 60 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28291 | 5' | -38.3 | NC_005902.1 | + | 117101 | 0.79 | 0.999521 |
Target: 5'- uUUGUUUGUAUAUAGCUUAaGUgUUAAAa -3' miRNA: 3'- -AACAAACAUAUAUCGAAUcCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 144055 | 0.79 | 0.999628 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAc -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 165973 | 0.79 | 0.999628 |
Target: 5'- cUUGUUUGUAUAUGGCUUauguguuaaaGGGUUa--- -3' miRNA: 3'- -AACAAACAUAUAUCGAA----------UCCAAauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 177624 | 0.78 | 0.999713 |
Target: 5'- --aUUUGUAUAUAGUUUAGGUgUAAAa -3' miRNA: 3'- aacAAACAUAUAUCGAAUCCAaAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 97471 | 0.78 | 0.999713 |
Target: 5'- cUUGUUUGUAUAUAaCUUAGGUgUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUcGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 27810 | 0.78 | 0.999834 |
Target: 5'- --aUUUGUAUAUAGCUUAGGcaUUAAAg -3' miRNA: 3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 25157 | 0.78 | 0.999875 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGggUUAAAu -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 31455 | 0.77 | 0.999932 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 23449 | 0.77 | 0.999932 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 51457 | 0.77 | 0.999932 |
Target: 5'- cUUGUUUGUAUAUAGCUUaaauguuaaaGGGUa---- -3' miRNA: 3'- -AACAAACAUAUAUCGAA----------UCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 20153 | 0.77 | 0.99995 |
Target: 5'- -----cGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 167185 | 0.77 | 0.99995 |
Target: 5'- -----cGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 140958 | 0.77 | 0.99995 |
Target: 5'- -aGUaaGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 42267 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 49991 | 0.77 | 0.999964 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGagUUAAAg -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 86485 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 57268 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 43887 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 36842 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUaUUAAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 18886 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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