miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 117101 0.79 0.999521
Target:  5'- uUUGUUUGUAUAUAGCUUAaGUgUUAAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 144055 0.79 0.999628
Target:  5'- -aGUgaGUAUAUAGCUUAGGUgUUAAAc -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 165973 0.79 0.999628
Target:  5'- cUUGUUUGUAUAUGGCUUauguguuaaaGGGUUa--- -3'
miRNA:   3'- -AACAAACAUAUAUCGAA----------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 177624 0.78 0.999713
Target:  5'- --aUUUGUAUAUAGUUUAGGUgUAAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 97471 0.78 0.999713
Target:  5'- cUUGUUUGUAUAUAaCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 27810 0.78 0.999834
Target:  5'- --aUUUGUAUAUAGCUUAGGcaUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 25157 0.78 0.999875
Target:  5'- -aGUgaGUAUAUAGCUUAGGggUUAAAu -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 23449 0.77 0.999932
Target:  5'- -aGUgaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 31455 0.77 0.999932
Target:  5'- -aGUgaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 51457 0.77 0.999932
Target:  5'- cUUGUUUGUAUAUAGCUUaaauguuaaaGGGUa---- -3'
miRNA:   3'- -AACAAACAUAUAUCGAA----------UCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 140958 0.77 0.99995
Target:  5'- -aGUaaGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 20153 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 167185 0.77 0.99995
Target:  5'- -----cGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 49991 0.77 0.999964
Target:  5'- -aGUgaGUAUAUAGCUUAGGagUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 42267 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 18886 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 36842 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUaUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 43887 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 86485 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 57268 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.