miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 157209 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 39451 0.66 1
Target:  5'- -----aGUAUAUAGCUUAGaugUUAGAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 107830 0.66 1
Target:  5'- -----cGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 155244 0.66 1
Target:  5'- -----cGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 93877 0.66 1
Target:  5'- -aGUaaGUAUAUAGCUUAGuugUUAAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 29308 0.67 1
Target:  5'- -aGUaaGUAUAUGGUUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 28192 0.67 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 78894 0.71 1
Target:  5'- cUUGUUUaUAUAUAGCUUAGaGggUGGAu -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUC-CaaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 23317 0.71 1
Target:  5'- -aGUgaaUAUGUAGCUUAGGUaUAAGg -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 92325 0.7 1
Target:  5'- cUUGUUc-UAUAUAGCUUAGGUa---- -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 104757 0.7 1
Target:  5'- --aUUUGUAUAUAGCUUAGaugUUAAc -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCca-AAUUu -5'
28291 5' -38.3 NC_005902.1 + 182962 0.7 1
Target:  5'- -aGUguaUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 97744 0.69 1
Target:  5'- --aUUUGcAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAACaUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 75130 0.69 1
Target:  5'- ------aUAUAUAGCUUAGGUaUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 149872 0.69 1
Target:  5'- cUUGUUUaUAUAUAGCUUAGaugUUAAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 49673 0.68 1
Target:  5'- aUGUuuauUUGUAUGUAGCUUAGa------ -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCcaaauuu -5'
28291 5' -38.3 NC_005902.1 + 15341 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 88866 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 135831 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 10152 0.68 1
Target:  5'- ---cUUGUAUAUAGCUcAGGUc---- -3'
miRNA:   3'- aacaAACAUAUAUCGAaUCCAaauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.