miRNA display CGI


Results 61 - 80 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 15341 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 49673 0.68 1
Target:  5'- aUGUuuauUUGUAUGUAGCUUAGa------ -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCcaaauuu -5'
28291 5' -38.3 NC_005902.1 + 15500 0.71 1
Target:  5'- aUGUgagUGUAuaUAUAGUUUAGGUgUUAAAa -3'
miRNA:   3'- aACAa--ACAU--AUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 110036 0.71 1
Target:  5'- cUUGUUUGUaAUAUGGCUUAGaugUUAAc -3'
miRNA:   3'- -AACAAACA-UAUAUCGAAUCca-AAUUu -5'
28291 5' -38.3 NC_005902.1 + 169147 0.72 1
Target:  5'- uUUGUUUGauaugcuuacuugAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACa------------UAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 124418 0.73 1
Target:  5'- --aUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 100698 0.73 1
Target:  5'- --aUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 173493 0.73 1
Target:  5'- cUUGUUUGUAUAUAaUUUAGGUaUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 159543 0.73 1
Target:  5'- cUUGUUUGUAUAUAGCa---GUUUAGAu -3'
miRNA:   3'- -AACAAACAUAUAUCGaaucCAAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 94023 0.73 1
Target:  5'- aUGUUUacucaUAUAUAGCUUAGGUauUUAAAa -3'
miRNA:   3'- aACAAAc----AUAUAUCGAAUCCA--AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 153062 0.71 1
Target:  5'- -aGUgaGUAUAUAGUUUAGGUg---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 139101 0.71 1
Target:  5'- aUGcUUGcAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACaUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 149872 0.69 1
Target:  5'- cUUGUUUaUAUAUAGCUUAGaugUUAAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 75130 0.69 1
Target:  5'- ------aUAUAUAGCUUAGGUaUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 97744 0.69 1
Target:  5'- --aUUUGcAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAACaUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 182962 0.7 1
Target:  5'- -aGUguaUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 104757 0.7 1
Target:  5'- --aUUUGUAUAUAGCUUAGaugUUAAc -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCca-AAUUu -5'
28291 5' -38.3 NC_005902.1 + 92325 0.7 1
Target:  5'- cUUGUUc-UAUAUAGCUUAGGUa---- -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 23317 0.71 1
Target:  5'- -aGUgaaUAUGUAGCUUAGGUaUAAGg -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 78894 0.71 1
Target:  5'- cUUGUUUaUAUAUAGCUUAGaGggUGGAu -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUC-CaaAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.