miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 29605 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 30823 0.84 0.979066
Target:  5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 31455 0.77 0.999932
Target:  5'- -aGUgaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 34757 0.67 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAGa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 36357 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 36842 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUaUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 38448 0.66 1
Target:  5'- --aUUUaUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 39301 0.96 0.616195
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 39451 0.66 1
Target:  5'- -----aGUAUAUAGCUUAGaugUUAGAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 40703 0.68 1
Target:  5'- -aGUgUGUAUAUAGCUUAGa------ -3'
miRNA:   3'- aaCAaACAUAUAUCGAAUCcaaauuu -5'
28291 5' -38.3 NC_005902.1 + 40938 0.69 1
Target:  5'- gUGUUgcuaaaUGUAUAGCUUGGGUa---- -3'
miRNA:   3'- aACAAac----AUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 42267 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 42395 0.74 0.999999
Target:  5'- -cGUUaaGUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aaCAAa-CAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 43887 0.77 0.999964
Target:  5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 45115 0.83 0.992192
Target:  5'- cUUGUUcGUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 47266 0.72 1
Target:  5'- --cUUUGUAUAUAGCUUAGauGUUUGu- -3'
miRNA:   3'- aacAAACAUAUAUCGAAUC--CAAAUuu -5'
28291 5' -38.3 NC_005902.1 + 48262 0.74 1
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 49673 0.68 1
Target:  5'- aUGUuuauUUGUAUGUAGCUUAGa------ -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCcaaauuu -5'
28291 5' -38.3 NC_005902.1 + 49991 0.77 0.999964
Target:  5'- -aGUgaGUAUAUAGCUUAGGagUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 50082 0.79 0.999226
Target:  5'- ---cUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCAaauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.