Results 41 - 60 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28291 | 5' | -38.3 | NC_005902.1 | + | 29605 | 0.96 | 0.616195 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 30823 | 0.84 | 0.979066 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGaugUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCca-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 31455 | 0.77 | 0.999932 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 34757 | 0.67 | 1 |
Target: 5'- ------aUAUAUAGCUUAGGUgUUAAGa -3' miRNA: 3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 36357 | 0.66 | 1 |
Target: 5'- ------aUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aacaaacAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 36842 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUaUUAAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 38448 | 0.66 | 1 |
Target: 5'- --aUUUaUAUAUAGCUUAGGUg---- -3' miRNA: 3'- aacAAAcAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 39301 | 0.96 | 0.616195 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 39451 | 0.66 | 1 |
Target: 5'- -----aGUAUAUAGCUUAGaugUUAGAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 40703 | 0.68 | 1 |
Target: 5'- -aGUgUGUAUAUAGCUUAGa------ -3' miRNA: 3'- aaCAaACAUAUAUCGAAUCcaaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 40938 | 0.69 | 1 |
Target: 5'- gUGUUgcuaaaUGUAUAGCUUGGGUa---- -3' miRNA: 3'- aACAAac----AUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 42267 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 42395 | 0.74 | 0.999999 |
Target: 5'- -cGUUaaGUAUAUAGCUUAGGUg---- -3' miRNA: 3'- aaCAAa-CAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 43887 | 0.77 | 0.999964 |
Target: 5'- -----aGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 45115 | 0.83 | 0.992192 |
Target: 5'- cUUGUUcGUAUAUAGCUUAGGUg---- -3' miRNA: 3'- -AACAAaCAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 47266 | 0.72 | 1 |
Target: 5'- --cUUUGUAUAUAGCUUAGauGUUUGu- -3' miRNA: 3'- aacAAACAUAUAUCGAAUC--CAAAUuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 48262 | 0.74 | 1 |
Target: 5'- --aUUUGUAuaUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aacAAACAU--AUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 49673 | 0.68 | 1 |
Target: 5'- aUGUuuauUUGUAUGUAGCUUAGa------ -3' miRNA: 3'- aACA----AACAUAUAUCGAAUCcaaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 49991 | 0.77 | 0.999964 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGagUUAAAg -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 50082 | 0.79 | 0.999226 |
Target: 5'- ---cUUGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aacaAACAUAUAUCGAAUCCAaauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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