miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 135831 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 114834 0.68 1
Target:  5'- aUGUuuauUUGUAUAUAGCUUaaguguuaaaaAGGUUa--- -3'
miRNA:   3'- aACA----AACAUAUAUCGAA-----------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 29494 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 49673 0.68 1
Target:  5'- aUGUuuauUUGUAUGUAGCUUAGa------ -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCcaaauuu -5'
28291 5' -38.3 NC_005902.1 + 15341 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 88866 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 28961 0.68 1
Target:  5'- ----aUGcUGUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaAC-AUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 13226 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 16919 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 26297 0.68 1
Target:  5'- --aUUUaUAUAUAGCUUAGGUaUUAAAa -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 25045 0.68 1
Target:  5'- --aUUUGUAUAUAGCUUAGa------ -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCcaaauuu -5'
28291 5' -38.3 NC_005902.1 + 174635 0.69 1
Target:  5'- -----aGUAUAUAGCUUAaGUUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCAAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 97744 0.69 1
Target:  5'- --aUUUGcAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAACaUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 50493 0.69 1
Target:  5'- gUGUgUGUAUcUAGUUUAGGUgUUAAAg -3'
miRNA:   3'- aACAaACAUAuAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 149872 0.69 1
Target:  5'- cUUGUUUaUAUAUAGCUUAGaugUUAAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 40938 0.69 1
Target:  5'- gUGUUgcuaaaUGUAUAGCUUGGGUa---- -3'
miRNA:   3'- aACAAac----AUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 75130 0.69 1
Target:  5'- ------aUAUAUAGCUUAGGUaUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaAUUU- -5'
28291 5' -38.3 NC_005902.1 + 10282 0.69 1
Target:  5'- ---cUUGUAUAUAGCUUGGaGUa---- -3'
miRNA:   3'- aacaAACAUAUAUCGAAUC-CAaauuu -5'
28291 5' -38.3 NC_005902.1 + 182962 0.7 1
Target:  5'- -aGUguaUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 169577 0.7 1
Target:  5'- -----aGUGUAUAGUUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.