miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 122672 0.66 1
Target:  5'- -aGUgaGUGUAUAGCUUAGaGaugUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUC-Ca--AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 154951 0.66 1
Target:  5'- ---cUUGUucAUAGCUUGGGUgUUAAAa -3'
miRNA:   3'- aacaAACAuaUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 99596 0.67 1
Target:  5'- --aUUUGUAUAUAGCUUAaGUgUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 100421 0.67 1
Target:  5'- -aGUcaGUAUAUAGCUUaaGGGUUa--- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAA--UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 34757 0.67 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAGa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 67389 0.67 1
Target:  5'- -aGUgUGUAUAUAGCUUaaguguuaaaAGGUUa--- -3'
miRNA:   3'- aaCAaACAUAUAUCGAA----------UCCAAauuu -5'
28291 5' -38.3 NC_005902.1 + 88603 0.67 1
Target:  5'- -----aGUaaGUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCA--UAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 109835 0.67 1
Target:  5'- --aUUUGUAUAUAGCUUAaGUaUUAAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 22576 0.67 1
Target:  5'- cUUGUUUGcuauacuuacuUAUAUAGCcUUAGGaUUUAAAg -3'
miRNA:   3'- -AACAAAC-----------AUAUAUCG-AAUCC-AAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 28192 0.67 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 11068 0.67 1
Target:  5'- --aUUUGUAUAUAGCUUAaGUgUUAGAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 29308 0.67 1
Target:  5'- -aGUaaGUAUAUGGUUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 157888 0.68 1
Target:  5'- ------uUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 10423 0.68 1
Target:  5'- cUUGUUUGUAUAcGGCUUAcGUaUUAAAg -3'
miRNA:   3'- -AACAAACAUAUaUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 13226 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 135831 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 15341 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 29494 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 16919 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 28961 0.68 1
Target:  5'- ----aUGcUGUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaAC-AUAUAUCGAAUCCAaauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.