Results 41 - 60 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28291 | 5' | -38.3 | NC_005902.1 | + | 142191 | 0.76 | 0.999982 |
Target: 5'- cUUGUUUGUAUAUAGCUUAaaagUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUcca-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 142021 | 0.83 | 0.987752 |
Target: 5'- aUGcgUGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aACaaACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 140958 | 0.77 | 0.99995 |
Target: 5'- -aGUaaGUAUAUAGCUUAGGUgUUAAAa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 139101 | 0.71 | 1 |
Target: 5'- aUGcUUGcAUAUAGCUUAGGUa---- -3' miRNA: 3'- aACaAACaUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 138801 | 0.83 | 0.987752 |
Target: 5'- -aGUgUGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aaCAaACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 137467 | 0.75 | 0.999991 |
Target: 5'- aUGUuuauUUGUGUAUAGUUUAGGUa---- -3' miRNA: 3'- aACA----AACAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 136082 | 0.93 | 0.745512 |
Target: 5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3' miRNA: 3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 135926 | 0.75 | 0.999996 |
Target: 5'- -aGUaaGUAUGUAGCUUAGGUgUUAGGa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 135831 | 0.68 | 1 |
Target: 5'- ------aUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 134190 | 0.71 | 1 |
Target: 5'- ---cUUGUAUAUAGCUUAGaugUUAAAg -3' miRNA: 3'- aacaAACAUAUAUCGAAUCca-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 134079 | 0.66 | 1 |
Target: 5'- ------aUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aacaaacAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 131985 | 0.73 | 1 |
Target: 5'- cUGUUcaUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aACAAacAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 131703 | 0.66 | 1 |
Target: 5'- ------aUAUAUAGCUUAGGUg---- -3' miRNA: 3'- aacaaacAUAUAUCGAAUCCAaauuu -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 131165 | 0.81 | 0.996015 |
Target: 5'- gUGUUgaGUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- aACAAa-CAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 131146 | 0.84 | 0.981573 |
Target: 5'- aUGUucuuUUGUAUAUAGCUUAGGUaUUAAAg -3' miRNA: 3'- aACA----AACAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 130910 | 0.71 | 1 |
Target: 5'- ---aUUGUuUAUAGCUUAGGaUUUAAAg -3' miRNA: 3'- aacaAACAuAUAUCGAAUCC-AAAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 125569 | 0.8 | 0.998785 |
Target: 5'- cUUGUUUaUAUAUAGCUUAGGUgUUAAAg -3' miRNA: 3'- -AACAAAcAUAUAUCGAAUCCA-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 124418 | 0.73 | 1 |
Target: 5'- --aUUUGUAUAUAGCUUAGaugUUAAAg -3' miRNA: 3'- aacAAACAUAUAUCGAAUCca-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 122804 | 0.75 | 0.999994 |
Target: 5'- -----aGUAUAUAGCUUAGGggUUAAAg -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCa-AAUUU- -5' |
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28291 | 5' | -38.3 | NC_005902.1 | + | 122672 | 0.66 | 1 |
Target: 5'- -aGUgaGUGUAUAGCUUAGaGaugUUAAAg -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUC-Ca--AAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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