miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 142191 0.76 0.999982
Target:  5'- cUUGUUUGUAUAUAGCUUAaaagUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 142021 0.83 0.987752
Target:  5'- aUGcgUGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aACaaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 140958 0.77 0.99995
Target:  5'- -aGUaaGUAUAUAGCUUAGGUgUUAAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 139101 0.71 1
Target:  5'- aUGcUUGcAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACaUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 138801 0.83 0.987752
Target:  5'- -aGUgUGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aaCAaACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 137467 0.75 0.999991
Target:  5'- aUGUuuauUUGUGUAUAGUUUAGGUa---- -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 136082 0.93 0.745512
Target:  5'- cUUGUUUGUAUAUAGCUUAGGagUUAAAg -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 135926 0.75 0.999996
Target:  5'- -aGUaaGUAUGUAGCUUAGGUgUUAGGa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 135831 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 134190 0.71 1
Target:  5'- ---cUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 134079 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 131985 0.73 1
Target:  5'- cUGUUcaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aACAAacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 131703 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 131165 0.81 0.996015
Target:  5'- gUGUUgaGUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aACAAa-CAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 131146 0.84 0.981573
Target:  5'- aUGUucuuUUGUAUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 130910 0.71 1
Target:  5'- ---aUUGUuUAUAGCUUAGGaUUUAAAg -3'
miRNA:   3'- aacaAACAuAUAUCGAAUCC-AAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 125569 0.8 0.998785
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 124418 0.73 1
Target:  5'- --aUUUGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 122804 0.75 0.999994
Target:  5'- -----aGUAUAUAGCUUAGGggUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCa-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 122672 0.66 1
Target:  5'- -aGUgaGUGUAUAGCUUAGaGaugUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUC-Ca--AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.