miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 5' -38.3 NC_005902.1 + 163428 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 88603 0.67 1
Target:  5'- -----aGUaaGUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaaCA--UAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 93877 0.66 1
Target:  5'- -aGUaaGUAUAUAGCUUAGuugUUAAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 155244 0.66 1
Target:  5'- -----cGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 107830 0.66 1
Target:  5'- -----cGUAUAUAGCUUAGaugUUAAAg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 39451 0.66 1
Target:  5'- -----aGUAUAUAGCUUAGaugUUAGAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCca-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 157209 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 131703 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 36357 0.66 1
Target:  5'- ------aUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 38448 0.66 1
Target:  5'- --aUUUaUAUAUAGCUUAGGUg---- -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 122672 0.66 1
Target:  5'- -aGUgaGUGUAUAGCUUAGaGaugUUAAAg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUC-Ca--AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 5212 0.66 1
Target:  5'- -aGUgaGUAUAUcGCUUAGGUguuaggUAGAa -3'
miRNA:   3'- aaCAaaCAUAUAuCGAAUCCAa-----AUUU- -5'
28291 5' -38.3 NC_005902.1 + 109835 0.67 1
Target:  5'- --aUUUGUAUAUAGCUUAaGUaUUAAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 22576 0.67 1
Target:  5'- cUUGUUUGcuauacuuacuUAUAUAGCcUUAGGaUUUAAAg -3'
miRNA:   3'- -AACAAAC-----------AUAUAUCG-AAUCC-AAAUUU- -5'
28291 5' -38.3 NC_005902.1 + 11068 0.67 1
Target:  5'- --aUUUGUAUAUAGCUUAaGUgUUAGAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 29308 0.67 1
Target:  5'- -aGUaaGUAUAUGGUUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 28192 0.67 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAu -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 10152 0.68 1
Target:  5'- ---cUUGUAUAUAGCUcAGGUc---- -3'
miRNA:   3'- aacaAACAUAUAUCGAaUCCAaauuu -5'
28291 5' -38.3 NC_005902.1 + 135831 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5'
28291 5' -38.3 NC_005902.1 + 88866 0.68 1
Target:  5'- ------aUAUAUAGCUUAGGUgUUAAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCA-AAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.