miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 8111 0.69 1
Target:  5'- ---aUUUUAAUAUaUAAGCUAUAUACu -3'
miRNA:   3'- guagAAAAUUGUAgGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 5651 0.69 1
Target:  5'- ----cUUUAACAaUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 63239 0.69 1
Target:  5'- ----cUUUAACccCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 177892 0.69 1
Target:  5'- -----aUUAAUAaCUAAGCUAUAUACg -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 175764 0.69 1
Target:  5'- --------uAC-UCCAAGCUAUAUACa -3'
miRNA:   3'- guagaaaauUGuAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 58397 0.69 1
Target:  5'- aUAUUUUUUAACAUUUAuaCUAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUucGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 113235 0.69 1
Target:  5'- cCAUCUUUaAACAUCCAAuugAUAUAUu -3'
miRNA:   3'- -GUAGAAAaUUGUAGGUUcgaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 34817 0.69 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 47186 0.69 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 148750 0.69 1
Target:  5'- uUAUCcUUUAACAcUUAAGCUAUAUGa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 184592 0.69 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 36800 0.69 1
Target:  5'- --cCUUUUAACAcUUAAGCUAUAcACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 54889 0.69 1
Target:  5'- -----cUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 12816 0.69 1
Target:  5'- aAUCUUUUAACccuuuaacUCCuAAGUUAUAUAUa -3'
miRNA:   3'- gUAGAAAAUUGu-------AGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 98815 0.69 1
Target:  5'- --cCUUUUAACA-CUuauGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGuu-CGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 136571 0.69 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 48382 0.69 1
Target:  5'- ----cUUUAACAcCUAAGUUAUGUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 27779 0.69 1
Target:  5'- aCAUCcUUUAAUGUCUAAaCUAUAUAUg -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 158110 0.69 1
Target:  5'- uUAUCUuuaacccUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGA-------AAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 172608 0.69 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.