miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 133624 0.68 1
Target:  5'- -----gUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 136237 0.68 1
Target:  5'- aAUUcUUUAAUAcCCAAGUUAUAUAUg -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 76204 0.68 1
Target:  5'- ---aUUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 117044 0.68 1
Target:  5'- --cCUUUUAAUAcUUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 90061 0.68 1
Target:  5'- -----cUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 63364 0.68 1
Target:  5'- -cUC-UUUAACAUCUcuAAGCUAUAcACu -3'
miRNA:   3'- guAGaAAAUUGUAGG--UUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 32357 0.68 1
Target:  5'- -----gUUAACAUCUAAaCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 178359 0.68 1
Target:  5'- aAUUUUUUuACucuacCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAuUGua---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 48508 0.68 1
Target:  5'- -----gUUAAUAUCUAAGCcAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 1203 0.68 1
Target:  5'- -----gUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 107137 0.68 1
Target:  5'- --cCUUUUAucCAcccUCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUu-GU---AGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 22618 0.68 1
Target:  5'- -----gUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 167250 0.68 1
Target:  5'- --cUUUUUAACAcCUAAGUUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 149102 0.68 1
Target:  5'- --cCUUUUAAC-UCCAGGCU---UACu -3'
miRNA:   3'- guaGAAAAUUGuAGGUUCGAuauAUG- -5'
28292 3' -38.8 NC_005902.1 + 107921 0.68 1
Target:  5'- --cCUUUauaAAC-UCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAa--UUGuAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 114547 0.68 1
Target:  5'- ----cUUUAACAcCUAGGCUAUAUAa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 122515 0.68 1
Target:  5'- gUAUUUacgUUUAACcUCUAGGUUAUAUACc -3'
miRNA:   3'- -GUAGA---AAAUUGuAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134329 0.68 1
Target:  5'- ----cUUUAACAUUUAAGC-AUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 158231 0.68 1
Target:  5'- ----cUUUAAUGcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67360 0.68 1
Target:  5'- --cCUUUUAACAaCUAAGUUAgAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUaUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.