miRNA display CGI


Results 41 - 60 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 159739 0.84 0.987259
Target:  5'- aAUCUUUUAAUAcCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 99988 0.83 0.988926
Target:  5'- ----cUUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 42980 0.83 0.988926
Target:  5'- ----cUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85908 0.83 0.988926
Target:  5'- ----cUUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146731 0.83 0.990418
Target:  5'- gUAUCcUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23217 0.83 0.991748
Target:  5'- --aCUUUcUAAUAUCUAAGCUAUAUGCa -3'
miRNA:   3'- guaGAAA-AUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 41021 0.82 0.992927
Target:  5'- aAUCUUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146586 0.82 0.992927
Target:  5'- gUAUCcauucUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- -GUAGaaa--AUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 141995 0.82 0.993968
Target:  5'- -cUCU-UUAACAUUUAAGCUAUAUACa -3'
miRNA:   3'- guAGAaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 4608 0.82 0.993968
Target:  5'- aUAUCcUUUAACAUCUAAGCgAUAUACu -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 135892 0.82 0.993968
Target:  5'- -cUCU-UUAACAUUUAAGCUAUGUACa -3'
miRNA:   3'- guAGAaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 116831 0.82 0.995679
Target:  5'- ----cUUUAACAUCUAAGUUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 162017 0.82 0.995679
Target:  5'- uCAUCUUUUAAUAUUUAAGC-AUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 138766 0.81 0.996373
Target:  5'- aAUCUcaacacaAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAaaa----UUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137900 0.81 0.996972
Target:  5'- -----gUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29088 0.81 0.996972
Target:  5'- aAUCcUUUAAUAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 71602 0.81 0.996972
Target:  5'- aAUCcUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134581 0.81 0.997487
Target:  5'- ----cUUUAACAUUUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 48113 0.81 0.997487
Target:  5'- ----cUUUAACAUUUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 153032 0.81 0.997927
Target:  5'- --aCUUUUaAACAUUUAAGCUAUGUACa -3'
miRNA:   3'- guaGAAAA-UUGUAGGUUCGAUAUAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.