miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 156339 0.8 0.998615
Target:  5'- --cUUUUUAACAUUUAAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 81285 0.86 0.962445
Target:  5'- -----gUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174462 0.94 0.696572
Target:  5'- aAUCUUUUuACAUCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAuUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 48113 0.81 0.997487
Target:  5'- ----cUUUAACAUUUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 21310 0.96 0.627095
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 68280 0.76 0.999982
Target:  5'- uUAUCUUUUAAC-UCCuAAGCcAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGuAGG-UUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 163388 0.92 0.774227
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 47238 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 8171 0.77 0.999965
Target:  5'- aAUCc--UAACAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaaaAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 39097 0.77 0.999911
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 167152 0.78 0.999842
Target:  5'- -uUCUcccUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guAGA---AAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 68934 0.79 0.999281
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 43526 0.8 0.998879
Target:  5'- --cCUUUUAACAUCUAAcCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 116831 0.82 0.995679
Target:  5'- ----cUUUAACAUCUAAGUUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146586 0.82 0.992927
Target:  5'- gUAUCcauucUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- -GUAGaaa--AUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 108901 0.84 0.981087
Target:  5'- --cCUUUUAACAgCUAGGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 105943 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29569 0.87 0.949451
Target:  5'- --cUUUUUAAUAUCCAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 30800 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134159 0.9 0.843877
Target:  5'- aGUCaUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.