miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 108901 0.84 0.981087
Target:  5'- --cCUUUUAACAgCUAGGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 105943 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 148239 0.88 0.915313
Target:  5'- aAUCUUUUAACAUUUAAGCUuAUAUACa -3'
miRNA:   3'- gUAGAAAAUUGUAGGUUCGA-UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 36163 0.92 0.774227
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 149198 0.8 0.998615
Target:  5'- aAUUUUUUAAUAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 41021 0.82 0.992927
Target:  5'- aAUCUUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 81285 0.86 0.962445
Target:  5'- -----gUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174462 0.94 0.696572
Target:  5'- aAUCUUUUuACAUCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAuUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 146586 0.82 0.992927
Target:  5'- gUAUCcauucUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- -GUAGaaa--AUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 21310 0.96 0.627095
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 11494 0.86 0.966205
Target:  5'- --cUUUUUAAUAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 45079 0.84 0.985405
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29569 0.87 0.949451
Target:  5'- --cUUUUUAAUAUCCAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 30800 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134159 0.9 0.843877
Target:  5'- aGUCaUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 163388 0.92 0.774227
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 68934 0.79 0.999281
Target:  5'- --cCUUUUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 43526 0.8 0.998879
Target:  5'- --cCUUUUAACAUCUAAcCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29088 0.81 0.996972
Target:  5'- aAUCcUUUAAUAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 141995 0.82 0.993968
Target:  5'- -cUCU-UUAACAUUUAAGCUAUAUACa -3'
miRNA:   3'- guAGAaAAUUGUAGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.