miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 131667 0.66 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAcaUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAU--AUG- -5'
28292 3' -38.8 NC_005902.1 + 67590 0.66 1
Target:  5'- -----gUUAACAUCUAAGCUcauuUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAu---AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 134040 0.67 1
Target:  5'- aUAUCUacauaUUAAC-UCCuAAGUUAUAUACa -3'
miRNA:   3'- -GUAGAa----AAUUGuAGG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 3360 0.67 1
Target:  5'- cUAUCUUUUAguuuuuaaaggguuACAcCUAAGCUAUAcaUACa -3'
miRNA:   3'- -GUAGAAAAU--------------UGUaGGUUCGAUAU--AUG- -5'
28292 3' -38.8 NC_005902.1 + 61676 0.67 1
Target:  5'- -----gUUAAUAUCUAAGCUAUAc-- -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 154578 0.67 1
Target:  5'- --aUUUUUAACccuuuacCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGua-----GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 180886 0.67 1
Target:  5'- ----cUUUAACAUCUAAGCaAUAUcACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGaUAUA-UG- -5'
28292 3' -38.8 NC_005902.1 + 76658 0.67 1
Target:  5'- ----cUUUAACAUCUAAGUUugcUAUGCu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAu--AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23608 0.67 1
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAcACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 144983 0.67 1
Target:  5'- aAUCcUUUAAUAcuaAAGCUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaggUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174999 0.67 1
Target:  5'- -----gUUAAUA-CUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 114250 0.67 1
Target:  5'- ----aUUUAAUAUCUAAGaUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCgAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 111387 0.67 1
Target:  5'- aUAUCgcUUUAACAccacCUAAGUUAUAUACu -3'
miRNA:   3'- -GUAGa-AAAUUGUa---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 66389 0.67 1
Target:  5'- cCAUCUUUUAcaAUAgaugauauuucuuuUCCuAGUUGUGUACa -3'
miRNA:   3'- -GUAGAAAAU--UGU--------------AGGuUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 84446 0.67 1
Target:  5'- -------gAugGUCC-AGCUAUAUGCa -3'
miRNA:   3'- guagaaaaUugUAGGuUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 19883 0.67 1
Target:  5'- aAUCU--UAAUAUCUAAGCUAcAUGa -3'
miRNA:   3'- gUAGAaaAUUGUAGGUUCGAUaUAUg -5'
28292 3' -38.8 NC_005902.1 + 183490 0.67 1
Target:  5'- --gCUgaaauauGCAUCCAAGCUAgauUACc -3'
miRNA:   3'- guaGAaaau---UGUAGGUUCGAUau-AUG- -5'
28292 3' -38.8 NC_005902.1 + 109996 0.67 1
Target:  5'- uUAUCcUUcAAUAUCUAAGCUAUAUu- -3'
miRNA:   3'- -GUAGaAAaUUGUAGGUUCGAUAUAug -5'
28292 3' -38.8 NC_005902.1 + 37199 0.67 1
Target:  5'- --cCUUUUAauacAUAUUUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAU----UGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 109908 0.67 1
Target:  5'- -uUUUUUUAACccuuuaagacCUAAGCUAUAUGCa -3'
miRNA:   3'- guAGAAAAUUGua--------GGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.