miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 15150 0.85 0.972912
Target:  5'- --cCUUUUAACAUgUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAgGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 15424 0.73 1
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 16874 0.7 1
Target:  5'- uUAUCcUUUAACAcCUAAGCUAUAUc- -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAug -5'
28292 3' -38.8 NC_005902.1 + 16888 0.86 0.958404
Target:  5'- --aCUUUUAACAUCUAAGCUAUGaACa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 18752 0.7 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 18857 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 19883 0.67 1
Target:  5'- aAUCU--UAAUAUCUAAGCUAcAUGa -3'
miRNA:   3'- gUAGAaaAUUGUAGGUUCGAUaUAUg -5'
28292 3' -38.8 NC_005902.1 + 21170 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 21310 0.96 0.627095
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 22618 0.68 1
Target:  5'- -----gUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23217 0.83 0.991748
Target:  5'- --aCUUUcUAAUAUCUAAGCUAUAUGCa -3'
miRNA:   3'- guaGAAA-AUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23259 0.7 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23286 0.73 1
Target:  5'- aAUCcUUUAAUAcCUAAGCUAUAUAUg -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23313 0.75 0.999996
Target:  5'- ------aUAACAUCUAAGCUAUAUGu -3'
miRNA:   3'- guagaaaAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 23414 0.8 0.998879
Target:  5'- -----gUUAACAcCCAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23420 0.73 1
Target:  5'- --------cACAUUCAAGCUAUAUACu -3'
miRNA:   3'- guagaaaauUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23608 0.67 1
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAcACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 23833 0.77 0.999951
Target:  5'- ----aUUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23977 0.7 1
Target:  5'- aAUCcUUUAACAUCUAAaCUAUAUAa -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUcGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 25013 0.72 1
Target:  5'- -cUCUU----UAUCUAAGCUAUAUACu -3'
miRNA:   3'- guAGAAaauuGUAGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.