miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 51852 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29569 0.87 0.949451
Target:  5'- --cUUUUUAAUAUCCAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143021 0.87 0.949451
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 145948 0.87 0.949451
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 28151 0.86 0.958404
Target:  5'- uUAUCUUUUAACAcCUAAGCUAUAUAa -3'
miRNA:   3'- -GUAGAAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 16888 0.86 0.958404
Target:  5'- --aCUUUUAACAUCUAAGCUAUGaACa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 81285 0.86 0.962445
Target:  5'- -----gUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 11494 0.86 0.966205
Target:  5'- --cUUUUUAAUAUCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 93988 0.86 0.966205
Target:  5'- --aCUUUUuaAACAUCUAAGCUAUGUACu -3'
miRNA:   3'- guaGAAAA--UUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 44015 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137434 0.85 0.972912
Target:  5'- --cCUUUUAACAUCUAAGCUAUAcACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 105943 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156431 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 18857 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 15150 0.85 0.972912
Target:  5'- --cCUUUUAACAUgUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAgGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 3024 0.85 0.975879
Target:  5'- -----aUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 108901 0.84 0.981087
Target:  5'- --cCUUUUAACAgCUAGGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 162749 0.84 0.981087
Target:  5'- uUAUCccUUUAACAUUUAAGCUAUAUGCa -3'
miRNA:   3'- -GUAGa-AAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 81050 0.84 0.983352
Target:  5'- aAUUUUUUAACAUCUAAGCUAUAc-- -3'
miRNA:   3'- gUAGAAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 45079 0.84 0.985405
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.