miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 43526 0.8 0.998879
Target:  5'- --cCUUUUAACAUCUAAcCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 95570 0.79 0.999641
Target:  5'- gAUCUUucaguuuuaaaagUUAACAUCUAAGUUAUAUAUa -3'
miRNA:   3'- gUAGAA-------------AAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 92158 0.92 0.795139
Target:  5'- aAUCUUUUAACAaCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 85055 0.9 0.87023
Target:  5'- --cUUUUUAACAUCUAGGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 61623 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 143021 0.87 0.949451
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137434 0.85 0.972912
Target:  5'- --cCUUUUAACAUCUAAGCUAUAcACu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 45079 0.84 0.985405
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 41021 0.82 0.992927
Target:  5'- aAUCUUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 162017 0.82 0.995679
Target:  5'- uCAUCUUUUAAUAUUUAAGC-AUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 25013 0.72 1
Target:  5'- -cUCUU----UAUCUAAGCUAUAUACu -3'
miRNA:   3'- guAGAAaauuGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 67706 0.72 1
Target:  5'- --cCUUUUAAC-UCCuAGGCUAUAUAg -3'
miRNA:   3'- guaGAAAAUUGuAGG-UUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 4196 0.78 0.99988
Target:  5'- --cCUUUUAAUAUUUAAGCUAUAUAa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 170851 0.77 0.999911
Target:  5'- ----cUUUAACAUgUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAgGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 47238 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 68280 0.76 0.999982
Target:  5'- uUAUCUUUUAAC-UCCuAAGCcAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGuAGG-UUCGaUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 40672 0.75 0.999994
Target:  5'- ----cUUUAACGUUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 128775 0.75 0.999997
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 13185 0.74 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACc -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23420 0.73 1
Target:  5'- --------cACAUUCAAGCUAUAUACu -3'
miRNA:   3'- guagaaaauUGUAGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.