miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 3' -47.8 NC_005902.1 + 131042 0.85 0.449774
Target:  5'- -gUGUUAUUAAUGAUGCCUUAGGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 99029 0.8 0.669509
Target:  5'- --cGUUAUCAAUGAUACCUUAGGGa- -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAAUCCCca -5'
28293 3' -47.8 NC_005902.1 + 169230 0.79 0.722618
Target:  5'- -gUGUCAUCAAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 55223 0.78 0.811841
Target:  5'- -aUGUUAUCGAUGACGCCUUAGaaguuaaaGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUC--------CCCA- -5'
28293 3' -47.8 NC_005902.1 + 24262 0.76 0.871505
Target:  5'- ---aUCAUCAAUGACACCUUAGGuGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 135622 0.78 0.793022
Target:  5'- -aUGUCAUCGAUGAUGCCUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 104180 0.75 0.907127
Target:  5'- ---aUCAUCAAUAACGCCUUAGGaGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 127708 0.73 0.962489
Target:  5'- -gUGUUAUUGAUAACGCCUUGGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 159830 0.71 0.982274
Target:  5'- ---aUCGUCAAUGAUGCCUUaggaguuaAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAA--------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 42330 0.71 0.986112
Target:  5'- ---aUCAUCAAUGACugUgaagUUGGGGGUa -3'
miRNA:   3'- ugacAGUAGUUAUUGugG----AAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 159714 0.71 0.987775
Target:  5'- --cGUCAUUGAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 5283 0.66 0.999826
Target:  5'- cAUUGUU---GAUAACACCUUaggaauuaAGGGGUu -3'
miRNA:   3'- -UGACAGuagUUAUUGUGGAA--------UCCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.