Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 157951 | 0.68 | 0.997722 |
Target: 5'- -gUGUCAUUGAUGAUACUUUAGGa-- -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCcca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 93505 | 0.66 | 0.999826 |
Target: 5'- ---aUUGUCAAUGACACUUUaggagucaGGGGGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAA--------UCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 81391 | 0.72 | 0.974819 |
Target: 5'- ---aUCAUCGAUAACACUUUaugaaucGGGGGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAA-------UCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 149287 | 0.68 | 0.997722 |
Target: 5'- ---aUCAUCGAUGAUGCCUUAGGa-- -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCcca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 63231 | 0.67 | 0.99913 |
Target: 5'- uAUUGUCAUCGAUGACACUUUGu---- -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAAUcccca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 20089 | 0.66 | 0.999866 |
Target: 5'- -aUGUCAUCGAUGACAUgagUUAGGaGUa -3' miRNA: 3'- ugACAGUAGUUAUUGUGg--AAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 136654 | 0.7 | 0.992941 |
Target: 5'- ---aUCAUUGAUGACACUUUAGGGa- -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCCca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 106087 | 0.67 | 0.998912 |
Target: 5'- cACUGUCAUCAAcgaugcuuugcauUAAUgauGCCUUAGGaGUu -3' miRNA: 3'- -UGACAGUAGUU-------------AUUG---UGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 159605 | 0.71 | 0.987775 |
Target: 5'- -gUGUCAUUGAUAAUGCCUUAGaaauuaaaGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUC--------CCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 55223 | 0.78 | 0.811841 |
Target: 5'- -aUGUUAUCGAUGACGCCUUAGaaguuaaaGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUC--------CCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 82101 | 0.66 | 0.999715 |
Target: 5'- ---aUCAUCAAUGAUGCUUUaagaauuaaAGGGGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAA---------UCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 169230 | 0.79 | 0.722618 |
Target: 5'- -gUGUCAUCAAUGAUGCCUUAGGaGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 95546 | 0.69 | 0.997283 |
Target: 5'- --cGUCAUCGAUGAUGCCUUaagaguuaaAGGGu- -3' miRNA: 3'- ugaCAGUAGUUAUUGUGGAA---------UCCCca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 99029 | 0.8 | 0.669509 |
Target: 5'- --cGUUAUCAAUGAUACCUUAGGGa- -3' miRNA: 3'- ugaCAGUAGUUAUUGUGGAAUCCCca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 71291 | 0.69 | 0.997236 |
Target: 5'- aACguaUUAUCAAUGAUGCCUugggaguUAGGGGUu -3' miRNA: 3'- -UGac-AGUAGUUAUUGUGGA-------AUCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 131042 | 0.85 | 0.449774 |
Target: 5'- -gUGUUAUUAAUGAUGCCUUAGGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 42330 | 0.71 | 0.986112 |
Target: 5'- ---aUCAUCAAUGACugUgaagUUGGGGGUa -3' miRNA: 3'- ugacAGUAGUUAUUGugG----AAUCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 135622 | 0.78 | 0.793022 |
Target: 5'- -aUGUCAUCGAUGAUGCCUUAGGa-- -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCcca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 159714 | 0.71 | 0.987775 |
Target: 5'- --cGUCAUUGAUGAUGCCUUAGGaGUu -3' miRNA: 3'- ugaCAGUAGUUAUUGUGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 174970 | 0.7 | 0.991853 |
Target: 5'- ---aUCAUCAAUGAUGCCUUAGGaGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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