miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 3' -47.8 NC_005902.1 + 94968 0.7 0.992941
Target:  5'- ---aUCAUCAAUAAUGCCUUAGGaGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 95546 0.69 0.997283
Target:  5'- --cGUCAUCGAUGAUGCCUUaagaguuaaAGGGu- -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAA---------UCCCca -5'
28293 3' -47.8 NC_005902.1 + 96071 0.67 0.999432
Target:  5'- gUUGUUGUUGAUAAUGCCUUAGGaGUu -3'
miRNA:   3'- uGACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 99029 0.8 0.669509
Target:  5'- --cGUUAUCAAUGAUACCUUAGGGa- -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAAUCCCca -5'
28293 3' -47.8 NC_005902.1 + 100354 0.79 0.733022
Target:  5'- uACUGUCAUCAAUGAUGCCUUAagaguaaaGGGUu -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUc-------CCCA- -5'
28293 3' -47.8 NC_005902.1 + 104180 0.75 0.907127
Target:  5'- ---aUCAUCAAUAACGCCUUAGGaGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 106087 0.67 0.998912
Target:  5'- cACUGUCAUCAAcgaugcuuugcauUAAUgauGCCUUAGGaGUu -3'
miRNA:   3'- -UGACAGUAGUU-------------AUUG---UGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 121577 0.66 0.999639
Target:  5'- uACUGauguuucgcaUCAUUAAUAAUGCCUUAGuugaaGGGUu -3'
miRNA:   3'- -UGAC----------AGUAGUUAUUGUGGAAUC-----CCCA- -5'
28293 3' -47.8 NC_005902.1 + 127708 0.73 0.962489
Target:  5'- -gUGUUAUUGAUAACGCCUUGGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 131042 0.85 0.449774
Target:  5'- -gUGUUAUUAAUGAUGCCUUAGGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 135622 0.78 0.793022
Target:  5'- -aUGUCAUCGAUGAUGCCUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 136153 0.67 0.998933
Target:  5'- -aUGUUAUCGAUAAUGCUUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 136654 0.7 0.992941
Target:  5'- ---aUCAUUGAUGACACUUUAGGGa- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCCca -5'
28293 3' -47.8 NC_005902.1 + 137571 0.73 0.95476
Target:  5'- cGCUGUUAUCAAUAAUGCCaUAGGa-- -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGaAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 139849 0.71 0.987775
Target:  5'- ---aUCAUUGAUGACGCCaugagUUAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGG-----AAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 139892 0.7 0.99391
Target:  5'- -aUGUCAUUGAUAAUAUCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 142115 0.76 0.87913
Target:  5'- cAUUGUCAUCGAUGAUGCUUUAGGuGUu -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 142445 0.7 0.99391
Target:  5'- -gUGUUAUCGAUGACAUUUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 143741 0.76 0.886509
Target:  5'- -aUGUCAUUGAUAAUGCCUUgaguuaAGGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAA------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 149287 0.68 0.997722
Target:  5'- ---aUCAUCGAUGAUGCCUUAGGa-- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.