miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 3' -47.8 NC_005902.1 + 159830 0.71 0.982274
Target:  5'- ---aUCGUCAAUGAUGCCUUaggaguuaAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAA--------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 42330 0.71 0.986112
Target:  5'- ---aUCAUCAAUGACugUgaagUUGGGGGUa -3'
miRNA:   3'- ugacAGUAGUUAUUGugG----AAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 159605 0.71 0.987775
Target:  5'- -gUGUCAUUGAUAAUGCCUUAGaaauuaaaGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUC--------CCCA- -5'
28293 3' -47.8 NC_005902.1 + 159714 0.71 0.987775
Target:  5'- --cGUCAUUGAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 139849 0.71 0.987775
Target:  5'- ---aUCAUUGAUGACGCCaugagUUAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGG-----AAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 163598 0.71 0.987775
Target:  5'- -gUGUUAUUAAUGACACUUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 174970 0.7 0.991853
Target:  5'- ---aUCAUCAAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 82399 0.7 0.992627
Target:  5'- -gUGUCAUCAAUAACACCacaucaauaauaucUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGG--------------AAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 82199 0.7 0.992941
Target:  5'- uAUUGUUAUCAAUGACACUUUgaaaguuaaAGGGu- -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAA---------UCCCca -5'
28293 3' -47.8 NC_005902.1 + 94968 0.7 0.992941
Target:  5'- ---aUCAUCAAUAAUGCCUUAGGaGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 136654 0.7 0.992941
Target:  5'- ---aUCAUUGAUGACACUUUAGGGa- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCCca -5'
28293 3' -47.8 NC_005902.1 + 33169 0.7 0.992941
Target:  5'- uAUUGUCAUCGAcGAUACUUUAGGaGUu -3'
miRNA:   3'- -UGACAGUAGUUaUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 152774 0.7 0.992941
Target:  5'- uAUUGUCAUCGAcGAUACUUUAGGaGUu -3'
miRNA:   3'- -UGACAGUAGUUaUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 139892 0.7 0.99391
Target:  5'- -aUGUCAUUGAUAAUAUCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 142445 0.7 0.99391
Target:  5'- -gUGUUAUCGAUGACAUUUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 49617 0.69 0.995528
Target:  5'- uACUGUguUUAcuuAUAuaaGCCUUAGGGGUu -3'
miRNA:   3'- -UGACAguAGU---UAUug-UGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 71291 0.69 0.997236
Target:  5'- aACguaUUAUCAAUGAUGCCUugggaguUAGGGGUu -3'
miRNA:   3'- -UGac-AGUAGUUAUUGUGGA-------AUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 95546 0.69 0.997283
Target:  5'- --cGUCAUCGAUGAUGCCUUaagaguuaaAGGGu- -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAA---------UCCCca -5'
28293 3' -47.8 NC_005902.1 + 149287 0.68 0.997722
Target:  5'- ---aUCAUCGAUGAUGCCUUAGGa-- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 157951 0.68 0.997722
Target:  5'- -gUGUCAUUGAUGAUACUUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.