Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 161918 | 1.08 | 0.021373 |
Target: 5'- uACUGUCAUCAAUAACACCUUAGGGGUa -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAAUCCCCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 172697 | 0.87 | 0.342909 |
Target: 5'- -gUGUUGUCAAUGAUGCCUUAGGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCCCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 131042 | 0.85 | 0.449774 |
Target: 5'- -gUGUUAUUAAUGAUGCCUUAGGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCCCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 99029 | 0.8 | 0.669509 |
Target: 5'- --cGUUAUCAAUGAUACCUUAGGGa- -3' miRNA: 3'- ugaCAGUAGUUAUUGUGGAAUCCCca -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 169230 | 0.79 | 0.722618 |
Target: 5'- -gUGUCAUCAAUGAUGCCUUAGGaGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 100354 | 0.79 | 0.733022 |
Target: 5'- uACUGUCAUCAAUGAUGCCUUAagaguaaaGGGUu -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAAUc-------CCCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 135622 | 0.78 | 0.793022 |
Target: 5'- -aUGUCAUCGAUGAUGCCUUAGGa-- -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCcca -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 20197 | 0.78 | 0.811841 |
Target: 5'- cAUUGUUAUCAAUGAUGCCUUAGGaGUu -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 55223 | 0.78 | 0.811841 |
Target: 5'- -aUGUUAUCGAUGACGCCUUAGaaguuaaaGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUC--------CCCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 37354 | 0.76 | 0.855544 |
Target: 5'- --cGUCAUCGAUGAUGCCUUAGGaGUu -3' miRNA: 3'- ugaCAGUAGUUAUUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 24262 | 0.76 | 0.871505 |
Target: 5'- ---aUCAUCAAUGACACCUUAGGuGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 142115 | 0.76 | 0.87913 |
Target: 5'- cAUUGUCAUCGAUGAUGCUUUAGGuGUu -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 143741 | 0.76 | 0.886509 |
Target: 5'- -aUGUCAUUGAUAAUGCCUUgaguuaAGGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAA------UCCCCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 104180 | 0.75 | 0.907127 |
Target: 5'- ---aUCAUCAAUAACGCCUUAGGaGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 149937 | 0.74 | 0.941259 |
Target: 5'- -aUGUCAUCAAccACACCUUAGGuGUu -3' miRNA: 3'- ugACAGUAGUUauUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 48202 | 0.74 | 0.946019 |
Target: 5'- ---aUCAUCGAUGACGCCUUAGGa-- -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCcca -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 137571 | 0.73 | 0.95476 |
Target: 5'- cGCUGUUAUCAAUAAUGCCaUAGGa-- -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGaAUCCcca -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 127708 | 0.73 | 0.962489 |
Target: 5'- -gUGUUAUUGAUAACGCCUUGGGaGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 158050 | 0.72 | 0.969248 |
Target: 5'- -gUGUCAUCAAcAACAUCUUAaGGGUu -3' miRNA: 3'- ugACAGUAGUUaUUGUGGAAUcCCCA- -5' |
|||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 81391 | 0.72 | 0.974819 |
Target: 5'- ---aUCAUCGAUAACACUUUaugaaucGGGGGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAA-------UCCCCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home