miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 3' -47.8 NC_005902.1 + 161918 1.08 0.021373
Target:  5'- uACUGUCAUCAAUAACACCUUAGGGGUa -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 136654 0.7 0.992941
Target:  5'- ---aUCAUUGAUGACACUUUAGGGa- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCCca -5'
28293 3' -47.8 NC_005902.1 + 157951 0.68 0.997722
Target:  5'- -gUGUCAUUGAUGAUACUUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 20089 0.66 0.999866
Target:  5'- -aUGUCAUCGAUGACAUgagUUAGGaGUa -3'
miRNA:   3'- ugACAGUAGUUAUUGUGg--AAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 37354 0.76 0.855544
Target:  5'- --cGUCAUCGAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 142115 0.76 0.87913
Target:  5'- cAUUGUCAUCGAUGAUGCUUUAGGuGUu -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 149937 0.74 0.941259
Target:  5'- -aUGUCAUCAAccACACCUUAGGuGUu -3'
miRNA:   3'- ugACAGUAGUUauUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 48202 0.74 0.946019
Target:  5'- ---aUCAUCGAUGACGCCUUAGGa-- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 81391 0.72 0.974819
Target:  5'- ---aUCAUCGAUAACACUUUaugaaucGGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAA-------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 33169 0.7 0.992941
Target:  5'- uAUUGUCAUCGAcGAUACUUUAGGaGUu -3'
miRNA:   3'- -UGACAGUAGUUaUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 139849 0.71 0.987775
Target:  5'- ---aUCAUUGAUGACGCCaugagUUAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGG-----AAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 158050 0.72 0.969248
Target:  5'- -gUGUCAUCAAcAACAUCUUAaGGGUu -3'
miRNA:   3'- ugACAGUAGUUaUUGUGGAAUcCCCA- -5'
28293 3' -47.8 NC_005902.1 + 172697 0.87 0.342909
Target:  5'- -gUGUUGUCAAUGAUGCCUUAGGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 82399 0.7 0.992627
Target:  5'- -gUGUCAUCAAUAACACCacaucaauaauaucUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGG--------------AAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 100354 0.79 0.733022
Target:  5'- uACUGUCAUCAAUGAUGCCUUAagaguaaaGGGUu -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUc-------CCCA- -5'
28293 3' -47.8 NC_005902.1 + 137571 0.73 0.95476
Target:  5'- cGCUGUUAUCAAUAAUGCCaUAGGa-- -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGaAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 82199 0.7 0.992941
Target:  5'- uAUUGUUAUCAAUGACACUUUgaaaguuaaAGGGu- -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAA---------UCCCca -5'
28293 3' -47.8 NC_005902.1 + 139892 0.7 0.99391
Target:  5'- -aUGUCAUUGAUAAUAUCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 20197 0.78 0.811841
Target:  5'- cAUUGUUAUCAAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 143741 0.76 0.886509
Target:  5'- -aUGUCAUUGAUAAUGCCUUgaguuaAGGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAA------UCCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.