Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28293 | 3' | -47.8 | NC_005902.1 | + | 5283 | 0.66 | 0.999826 |
Target: 5'- cAUUGUU---GAUAACACCUUaggaauuaAGGGGUu -3' miRNA: 3'- -UGACAGuagUUAUUGUGGAA--------UCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 20089 | 0.66 | 0.999866 |
Target: 5'- -aUGUCAUCGAUGACAUgagUUAGGaGUa -3' miRNA: 3'- ugACAGUAGUUAUUGUGg--AAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 20197 | 0.78 | 0.811841 |
Target: 5'- cAUUGUUAUCAAUGAUGCCUUAGGaGUu -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 23570 | 0.67 | 0.999295 |
Target: 5'- -aUGcCAUCAAcAACACCUUAGGa-- -3' miRNA: 3'- ugACaGUAGUUaUUGUGGAAUCCcca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 24262 | 0.76 | 0.871505 |
Target: 5'- ---aUCAUCAAUGACACCUUAGGuGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 33169 | 0.7 | 0.992941 |
Target: 5'- uAUUGUCAUCGAcGAUACUUUAGGaGUu -3' miRNA: 3'- -UGACAGUAGUUaUUGUGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 37354 | 0.76 | 0.855544 |
Target: 5'- --cGUCAUCGAUGAUGCCUUAGGaGUu -3' miRNA: 3'- ugaCAGUAGUUAUUGUGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 42330 | 0.71 | 0.986112 |
Target: 5'- ---aUCAUCAAUGACugUgaagUUGGGGGUa -3' miRNA: 3'- ugacAGUAGUUAUUGugG----AAUCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 48202 | 0.74 | 0.946019 |
Target: 5'- ---aUCAUCGAUGACGCCUUAGGa-- -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAAUCCcca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 49617 | 0.69 | 0.995528 |
Target: 5'- uACUGUguUUAcuuAUAuaaGCCUUAGGGGUu -3' miRNA: 3'- -UGACAguAGU---UAUug-UGGAAUCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 55223 | 0.78 | 0.811841 |
Target: 5'- -aUGUUAUCGAUGACGCCUUAGaaguuaaaGGGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUC--------CCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 63231 | 0.67 | 0.99913 |
Target: 5'- uAUUGUCAUCGAUGACACUUUGu---- -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAAUcccca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 67081 | 0.66 | 0.999715 |
Target: 5'- ---aUCAUCAAcAACACCUUAGGa-- -3' miRNA: 3'- ugacAGUAGUUaUUGUGGAAUCCcca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 71291 | 0.69 | 0.997236 |
Target: 5'- aACguaUUAUCAAUGAUGCCUugggaguUAGGGGUu -3' miRNA: 3'- -UGac-AGUAGUUAUUGUGGA-------AUCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 81391 | 0.72 | 0.974819 |
Target: 5'- ---aUCAUCGAUAACACUUUaugaaucGGGGGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAA-------UCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 82101 | 0.66 | 0.999715 |
Target: 5'- ---aUCAUCAAUGAUGCUUUaagaauuaaAGGGGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAA---------UCCCCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 82199 | 0.7 | 0.992941 |
Target: 5'- uAUUGUUAUCAAUGACACUUUgaaaguuaaAGGGu- -3' miRNA: 3'- -UGACAGUAGUUAUUGUGGAA---------UCCCca -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 82399 | 0.7 | 0.992627 |
Target: 5'- -gUGUCAUCAAUAACACCacaucaauaauaucUUAGGaGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGG--------------AAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 90161 | 0.66 | 0.999776 |
Target: 5'- -gUGUUGUUGAUAAUGCCUUAGGaGUu -3' miRNA: 3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5' |
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28293 | 3' | -47.8 | NC_005902.1 | + | 93505 | 0.66 | 0.999826 |
Target: 5'- ---aUUGUCAAUGACACUUUaggagucaGGGGGUu -3' miRNA: 3'- ugacAGUAGUUAUUGUGGAA--------UCCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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