miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 3' -47.8 NC_005902.1 + 174970 0.7 0.991853
Target:  5'- ---aUCAUCAAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 172697 0.87 0.342909
Target:  5'- -gUGUUGUCAAUGAUGCCUUAGGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 169230 0.79 0.722618
Target:  5'- -gUGUCAUCAAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 163598 0.71 0.987775
Target:  5'- -gUGUUAUUAAUGACACUUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 161918 1.08 0.021373
Target:  5'- uACUGUCAUCAAUAACACCUUAGGGGUa -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 159830 0.71 0.982274
Target:  5'- ---aUCGUCAAUGAUGCCUUaggaguuaAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAA--------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 159714 0.71 0.987775
Target:  5'- --cGUCAUUGAUGAUGCCUUAGGaGUu -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 159605 0.71 0.987775
Target:  5'- -gUGUCAUUGAUAAUGCCUUAGaaauuaaaGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUC--------CCCA- -5'
28293 3' -47.8 NC_005902.1 + 158050 0.72 0.969248
Target:  5'- -gUGUCAUCAAcAACAUCUUAaGGGUu -3'
miRNA:   3'- ugACAGUAGUUaUUGUGGAAUcCCCA- -5'
28293 3' -47.8 NC_005902.1 + 157951 0.68 0.997722
Target:  5'- -gUGUCAUUGAUGAUACUUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 152774 0.7 0.992941
Target:  5'- uAUUGUCAUCGAcGAUACUUUAGGaGUu -3'
miRNA:   3'- -UGACAGUAGUUaUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 149937 0.74 0.941259
Target:  5'- -aUGUCAUCAAccACACCUUAGGuGUu -3'
miRNA:   3'- ugACAGUAGUUauUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 149287 0.68 0.997722
Target:  5'- ---aUCAUCGAUGAUGCCUUAGGa-- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 143741 0.76 0.886509
Target:  5'- -aUGUCAUUGAUAAUGCCUUgaguuaAGGGGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAA------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 142445 0.7 0.99391
Target:  5'- -gUGUUAUCGAUGACAUUUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 142115 0.76 0.87913
Target:  5'- cAUUGUCAUCGAUGAUGCUUUAGGuGUu -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 139892 0.7 0.99391
Target:  5'- -aUGUCAUUGAUAAUAUCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 139849 0.71 0.987775
Target:  5'- ---aUCAUUGAUGACGCCaugagUUAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGG-----AAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 137571 0.73 0.95476
Target:  5'- cGCUGUUAUCAAUAAUGCCaUAGGa-- -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGaAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 136654 0.7 0.992941
Target:  5'- ---aUCAUUGAUGACACUUUAGGGa- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.