miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 134646 0.72 0.999689
Target:  5'- uUAAUUCCUAAuGUGUUGUUAAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 67291 0.72 0.999689
Target:  5'- uUAACUCCUAAaGCAUUaUUGAUAAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 36906 0.72 0.999603
Target:  5'- uUAACUCCUAAGGCuaguauaGUgagcAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGuag----CAau--UAUUGU- -5'
28293 5' -43 NC_005902.1 + 98707 0.73 0.999497
Target:  5'- uUAACUCUUAAGGUGUCaUUAAcAACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUaUUGU- -5'
28293 5' -43 NC_005902.1 + 134527 0.73 0.99921
Target:  5'- uUAGCUUCUAAGGUAUUGUcAAU-ACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAaUUAuUGU- -5'
28293 5' -43 NC_005902.1 + 22441 0.73 0.99902
Target:  5'- uUAACUCCUAAaGUGUCaUUAAUAACAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 175460 0.74 0.99852
Target:  5'- uUAACUUUUAAaGUAUCGUUGGUAACGc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 89966 0.74 0.99852
Target:  5'- uUAACUCCUAAGGCAUUaucaacAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaauuaUUGU- -5'
28293 5' -43 NC_005902.1 + 4547 0.74 0.998199
Target:  5'- uUAACUUCUAAaGCAUUGUcGAUAACAu -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 5049 0.74 0.997378
Target:  5'- uUAACUCCUAAaGCGUUGUcAAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 87010 0.74 0.997378
Target:  5'- uUAAUcCCUAAGGUAUCaUUGAUAACGc -3'
miRNA:   3'- -AUUGaGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 65589 0.74 0.997378
Target:  5'- cUAACUCCUAAGGU---GUUAAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGuagCAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 42138 0.74 0.997378
Target:  5'- -uACUCCUAAaaCAUUGUUAAUGACAc -3'
miRNA:   3'- auUGAGGAUUccGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 39162 0.75 0.996863
Target:  5'- uUAACUCCUAAaaaGUUGUUGAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUccgUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 13341 0.75 0.996863
Target:  5'- uUAACcCCUAAGGCAUCaUUGAcAACAc -3'
miRNA:   3'- -AUUGaGGAUUCCGUAGcAAUUaUUGU- -5'
28293 5' -43 NC_005902.1 + 29543 0.75 0.996863
Target:  5'- uUAACUCUUAAGGCAUCaucAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 25073 0.75 0.996267
Target:  5'- uUAACUCCUAAaGCGUUGUUGAcGAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAAUUaUUGU- -5'
28293 5' -43 NC_005902.1 + 175943 0.76 0.993611
Target:  5'- uUAACUCCUAAGGUAUCaucaacaaugcuuuGUgguguUGAUAACAg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAG--------------CA-----AUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 110173 0.76 0.992887
Target:  5'- uUAAUUCCUAAGGCAUUGUcagAAUAu-- -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAa--UUAUugu -5'
28293 5' -43 NC_005902.1 + 124491 0.76 0.992887
Target:  5'- -cACUCCUAAGGCAUUGUc---AACGa -3'
miRNA:   3'- auUGAGGAUUCCGUAGCAauuaUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.