miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 24120 0.69 0.999991
Target:  5'- -uACcCCUAAGGUGUUaUUGAUGACAg -3'
miRNA:   3'- auUGaGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 113026 0.7 0.999988
Target:  5'- -----gUUAAGGCAUUGUUAAUGAUAc -3'
miRNA:   3'- auugagGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 93921 0.7 0.999983
Target:  5'- uUAACUUUUAAGGUAUCaucAAUGACAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 43964 0.7 0.999976
Target:  5'- uUAACUUCgAAGGCAUCaucAAUAACAg -3'
miRNA:   3'- -AUUGAGGaUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 86345 0.7 0.999967
Target:  5'- uUAAUUCCUAAGGCGUCauc---AACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaauuaUUGU- -5'
28293 5' -43 NC_005902.1 + 26434 0.7 0.999955
Target:  5'- uUAAUUUCUAAGGCAUUaucAAUGACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 76077 0.7 0.999955
Target:  5'- uUAACUCUUAAGGU---GUUGAUGAUAu -3'
miRNA:   3'- -AUUGAGGAUUCCGuagCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 58331 0.71 0.999918
Target:  5'- uUAACUCCcAAGGCGUUaucAAUAACAc -3'
miRNA:   3'- -AUUGAGGaUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 85000 0.71 0.999918
Target:  5'- uUAAUUCCUAAaGCAUUGUgGAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 42050 0.71 0.999891
Target:  5'- uUAACUUCUAAGGCAUUaUUGcUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUuAUUGU- -5'
28293 5' -43 NC_005902.1 + 168315 0.71 0.999891
Target:  5'- uUAAUUCCUAAGGCAUCa--------- -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaauuauugu -5'
28293 5' -43 NC_005902.1 + 50312 0.71 0.999891
Target:  5'- uUAACUUUUAAGaCAUUGUUGAUGAUAu -3'
miRNA:   3'- -AUUGAGGAUUCcGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 63172 0.71 0.999891
Target:  5'- uUAAUUCCUAAGGCAUCauc---AACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaauuaUUGU- -5'
28293 5' -43 NC_005902.1 + 18701 0.71 0.999857
Target:  5'- uUAAUUCCUAAaGCAUCaUUGAUAAUAa -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 161778 0.71 0.999857
Target:  5'- uUAACaCCUAAGGUGUCaUUGAUGAUAc -3'
miRNA:   3'- -AUUGaGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 8347 0.71 0.999857
Target:  5'- uUAACUCCUAAaaCAUUGUcGAUGACAu -3'
miRNA:   3'- -AUUGAGGAUUccGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 160824 0.72 0.999758
Target:  5'- uUAACUCa--AGGCGUUGUcAAUGACAc -3'
miRNA:   3'- -AUUGAGgauUCCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 76028 0.72 0.999758
Target:  5'- uUAACUCCUAAGGUAUUaucAAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 134646 0.72 0.999689
Target:  5'- uUAAUUCCUAAuGUGUUGUUAAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 67291 0.72 0.999689
Target:  5'- uUAACUCCUAAaGCAUUaUUGAUAAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.