miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 122716 0.82 0.885013
Target:  5'- uUAACcUCUAAGGCAUUGUUAAUAAUAc -3'
miRNA:   3'- -AUUGaGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 149858 0.84 0.816002
Target:  5'- aAACUCCUAAaaCAUCGUUGAUGACAa -3'
miRNA:   3'- aUUGAGGAUUccGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 167210 0.87 0.679139
Target:  5'- uUAACUCCUAAGGCAUUGUUuacAACAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAuuaUUGU- -5'
28293 5' -43 NC_005902.1 + 16809 0.96 0.298765
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUGACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 114745 0.78 0.979161
Target:  5'- cUAACUCCcAAGGCAUCaUUGAUAAUc -3'
miRNA:   3'- -AUUGAGGaUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 122593 0.8 0.931452
Target:  5'- uUAAUUCCUAAGGCAUCcUUAAcAACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUaUUGU- -5'
28293 5' -43 NC_005902.1 + 27734 0.84 0.796528
Target:  5'- uUAACUCCUAAGGCAucaUCGccGAUGGCAc -3'
miRNA:   3'- -AUUGAGGAUUCCGU---AGCaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 169077 0.97 0.249048
Target:  5'- uUGAUUCUUAAGGCGUCGUUGAUGACAg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 90494 0.8 0.931452
Target:  5'- uUAACUCUUAAGGCAUCaucGAUGACGa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 15807 0.98 0.229924
Target:  5'- uUAACUCCUAAGGCAUUGUUAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 54996 0.84 0.816002
Target:  5'- uUAACcCCUAAGGCAUCaUUAAUAACAc -3'
miRNA:   3'- -AUUGaGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 33262 0.82 0.8997
Target:  5'- uUAACUCCUAAaGUAUCGUcGAUGACAa -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 81860 0.85 0.765998
Target:  5'- uUAACUCCUAAGGCGUUaUUGAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 67196 0.86 0.72333
Target:  5'- uUAACUCCUAAGGCAUC---AAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 20223 0.9 0.544828
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 39020 0.93 0.401055
Target:  5'- uUAACUUCUAAGGCAUUGUUAAUGAUAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 110173 0.76 0.992887
Target:  5'- uUAAUUCCUAAGGCAUUGUcagAAUAu-- -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAa--UUAUugu -5'
28293 5' -43 NC_005902.1 + 134278 0.77 0.981525
Target:  5'- uUAACUCCUAAGGCAUUau---UAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaauuAUUGU- -5'
28293 5' -43 NC_005902.1 + 67826 0.8 0.94213
Target:  5'- uUAACUCCUAAaGCAUUGUcAAUGACAu -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 1316 0.8 0.936935
Target:  5'- uUAAUUCCUAAGGUGUUGUUGAUAu-- -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUugu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.