miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 26325 0.85 0.765998
Target:  5'- uUAACUCCUAAGGCAUCaucAAUGACGc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 26434 0.7 0.999955
Target:  5'- uUAAUUUCUAAGGCAUUaucAAUGACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 27734 0.84 0.796528
Target:  5'- uUAACUCCUAAGGCAucaUCGccGAUGGCAc -3'
miRNA:   3'- -AUUGAGGAUUCCGU---AGCaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 28880 0.72 0.999689
Target:  5'- uUAAUUCCUAGGGCAUCagcacuGUcAGUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAG------CAaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 29543 0.75 0.996863
Target:  5'- uUAACUCUUAAGGCAUCaucAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 33262 0.82 0.8997
Target:  5'- uUAACUCCUAAaGUAUCGUcGAUGACAa -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 36101 0.8 0.931451
Target:  5'- uUAACaCCUAAGGUGUgGUUGAUGACAu -3'
miRNA:   3'- -AUUGaGGAUUCCGUAgCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 36758 0.69 0.999996
Target:  5'- ---aUCCUAAGGCAUCaucGAUGAUg -3'
miRNA:   3'- auugAGGAUUCCGUAGcaaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 36906 0.72 0.999603
Target:  5'- uUAACUCCUAAGGCuaguauaGUgagcAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGuag----CAau--UAUUGU- -5'
28293 5' -43 NC_005902.1 + 37826 0.88 0.622926
Target:  5'- uUAAUUCCUAAGGUAUUGUUGAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 39020 0.93 0.401055
Target:  5'- uUAACUUCUAAGGCAUUGUUAAUGAUAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 39162 0.75 0.996863
Target:  5'- uUAACUCCUAAaaaGUUGUUGAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUccgUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 41917 0.82 0.885012
Target:  5'- uUAACUCCUAAGGCAUCaaUGAU-ACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaAUUAuUGU- -5'
28293 5' -43 NC_005902.1 + 42050 0.71 0.999891
Target:  5'- uUAACUUCUAAGGCAUUaUUGcUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUuAUUGU- -5'
28293 5' -43 NC_005902.1 + 42138 0.74 0.997378
Target:  5'- -uACUCCUAAaaCAUUGUUAAUGACAc -3'
miRNA:   3'- auUGAGGAUUccGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 43964 0.7 0.999976
Target:  5'- uUAACUUCgAAGGCAUCaucAAUAACAg -3'
miRNA:   3'- -AUUGAGGaUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 45108 0.83 0.852436
Target:  5'- uUAAUUCCUAAGGUAUUGUgucAAUGACAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAa--UUAUUGU- -5'
28293 5' -43 NC_005902.1 + 48047 0.87 0.667945
Target:  5'- aUAACUCCUAAGGCAUCGUc---AGCAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAauuaUUGU- -5'
28293 5' -43 NC_005902.1 + 48078 0.84 0.80636
Target:  5'- uUAAUUCCUAAGGCAUCaUUAAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 48466 0.83 0.852436
Target:  5'- uUAGCUCCUAuGGCAUUaUUGAUAACAg -3'
miRNA:   3'- -AUUGAGGAUuCCGUAGcAAUUAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.