miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 1316 0.8 0.936935
Target:  5'- uUAAUUCCUAAGGUGUUGUUGAUAu-- -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUugu -5'
28293 5' -43 NC_005902.1 + 4547 0.74 0.998199
Target:  5'- uUAACUUCUAAaGCAUUGUcGAUAACAu -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 5049 0.74 0.997378
Target:  5'- uUAACUCCUAAaGCGUUGUcAAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 5316 0.8 0.936935
Target:  5'- uUAACUUCUAAGGUGUCGUcAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 8292 0.68 0.999998
Target:  5'- uUAACUCUUGAGGUGcUGUUGAUGc-- -3'
miRNA:   3'- -AUUGAGGAUUCCGUaGCAAUUAUugu -5'
28293 5' -43 NC_005902.1 + 8347 0.71 0.999857
Target:  5'- uUAACUCCUAAaaCAUUGUcGAUGACAu -3'
miRNA:   3'- -AUUGAGGAUUccGUAGCAaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 11070 0.91 0.470156
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 11443 0.66 1
Target:  5'- uUAAUUCUUAAaaaGUAUUGUUGAUAACGc -3'
miRNA:   3'- -AUUGAGGAUUc--CGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 13341 0.75 0.996863
Target:  5'- uUAACcCCUAAGGCAUCaUUGAcAACAc -3'
miRNA:   3'- -AUUGaGGAUUCCGUAGcAAUUaUUGU- -5'
28293 5' -43 NC_005902.1 + 15807 0.98 0.229924
Target:  5'- uUAACUCCUAAGGCAUUGUUAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 15934 0.84 0.82544
Target:  5'- uUAAUUCCUGGGGUAUCaUUAAUAACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 16809 0.96 0.298765
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUGACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 18519 0.86 0.73417
Target:  5'- uUAACUCCUAAGGCAUUaUUAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 18701 0.71 0.999857
Target:  5'- uUAAUUCCUAAaGCAUCaUUGAUAAUAa -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 19950 0.66 1
Target:  5'- cAACUCCaua--CAUUGUUAAUGACAu -3'
miRNA:   3'- aUUGAGGauuccGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 20223 0.9 0.544828
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 22441 0.73 0.99902
Target:  5'- uUAACUCCUAAaGUGUCaUUAAUAACAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 24120 0.69 0.999991
Target:  5'- -uACcCCUAAGGUGUUaUUGAUGACAg -3'
miRNA:   3'- auUGaGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 25073 0.75 0.996267
Target:  5'- uUAACUCCUAAaGCGUUGUUGAcGAUAc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAAUUaUUGU- -5'
28293 5' -43 NC_005902.1 + 26210 0.81 0.913264
Target:  5'- uUAACUCCUAAGGCAUCaUUGAcGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUaUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.