Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28293 | 5' | -43 | NC_005902.1 | + | 161952 | 1.09 | 0.063708 |
Target: 5'- uUAACUCCUAAGGCAUCGUUAAUAACAc -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 27734 | 0.84 | 0.796528 |
Target: 5'- uUAACUCCUAAGGCAucaUCGccGAUGGCAc -3' miRNA: 3'- -AUUGAGGAUUCCGU---AGCaaUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 149858 | 0.84 | 0.816002 |
Target: 5'- aAACUCCUAAaaCAUCGUUGAUGACAa -3' miRNA: 3'- aUUGAGGAUUccGUAGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 63113 | 0.66 | 1 |
Target: 5'- uUAACUUUUAAGGCAUCaucaUUGAUAucCAa -3' miRNA: 3'- -AUUGAGGAUUCCGUAGc---AAUUAUu-GU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 39020 | 0.93 | 0.401055 |
Target: 5'- uUAACUUCUAAGGCAUUGUUAAUGAUAu -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 11070 | 0.91 | 0.470156 |
Target: 5'- uUAACUCCUAAGGCAUCaUUGAUGAUAc -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 20223 | 0.9 | 0.544828 |
Target: 5'- uUAACUCCUAAGGCAUCaUUGAUAAUg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 104285 | 0.89 | 0.600426 |
Target: 5'- uUAACUCUUAAGGCAUCaUUGAUGACGg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 67196 | 0.86 | 0.72333 |
Target: 5'- uUAACUCCUAAGGCAUC---AAUAACAa -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 83801 | 0.85 | 0.790542 |
Target: 5'- uUAACUCCUAAGGCAUuaaugauguaaaacaUGUUGAUGAUAu -3' miRNA: 3'- -AUUGAGGAUUCCGUA---------------GCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 26325 | 0.85 | 0.765998 |
Target: 5'- uUAACUCCUAAGGCAUCaucAAUGACGc -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 167210 | 0.87 | 0.679139 |
Target: 5'- uUAACUCCUAAGGCAUUGUUuacAACAu -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAAuuaUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 15807 | 0.98 | 0.229924 |
Target: 5'- uUAACUCCUAAGGCAUUGUUAAUGAUg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 81860 | 0.85 | 0.765998 |
Target: 5'- uUAACUCCUAAGGCGUUaUUGAUGAUg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 169077 | 0.97 | 0.249048 |
Target: 5'- uUGAUUCUUAAGGCGUCGUUGAUGACAg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 48047 | 0.87 | 0.667945 |
Target: 5'- aUAACUCCUAAGGCAUCGUc---AGCAa -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAauuaUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 184449 | 0.85 | 0.776335 |
Target: 5'- uUAACUCUUAAGGUGUUGUUAAUGAUg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 54996 | 0.84 | 0.816002 |
Target: 5'- uUAACcCCUAAGGCAUCaUUAAUAACAc -3' miRNA: 3'- -AUUGaGGAUUCCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 16809 | 0.96 | 0.298765 |
Target: 5'- uUAACUCCUAAGGCAUCaUUGAUGACAc -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 162469 | 0.91 | 0.490999 |
Target: 5'- uUAAUUCCUAAGGUGUUGUUGAUGGCAu -3' miRNA: 3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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