miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 161952 1.09 0.063708
Target:  5'- uUAACUCCUAAGGCAUCGUUAAUAACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 15807 0.98 0.229924
Target:  5'- uUAACUCCUAAGGCAUUGUUAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 169077 0.97 0.249048
Target:  5'- uUGAUUCUUAAGGCGUCGUUGAUGACAg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 60303 0.97 0.249048
Target:  5'- uUAACUUCUAAGGCAUUGUUGAUGACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 146987 0.97 0.255709
Target:  5'- uUAACUUCUAAGGCAUUGUUAAUAACAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 165839 0.96 0.283817
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 16809 0.96 0.298765
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUGACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 39020 0.93 0.401055
Target:  5'- uUAACUUCUAAGGCAUUGUUAAUGAUAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 87066 0.93 0.410529
Target:  5'- uUAACUUCUAAGGCAUUGUUAAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 91582 0.92 0.449774
Target:  5'- uUAACUCCUAAGGCAUUGUcuAUAACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAauUAUUGU- -5'
28293 5' -43 NC_005902.1 + 133163 0.92 0.449774
Target:  5'- uUAACUCUUAAGGUAUUGUUGAUGACGu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 11070 0.91 0.470156
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUGAUAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 162469 0.91 0.490999
Target:  5'- uUAAUUCCUAAGGUGUUGUUGAUGGCAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 118830 0.9 0.53389
Target:  5'- uUAACUCCUAAGGCAUUGUUAuUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUuAUUGu -5'
28293 5' -43 NC_005902.1 + 20223 0.9 0.544828
Target:  5'- uUAACUCCUAAGGCAUCaUUGAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 104285 0.89 0.600426
Target:  5'- uUAACUCUUAAGGCAUCaUUGAUGACGg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 37826 0.88 0.622926
Target:  5'- uUAAUUCCUAAGGUAUUGUUGAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 169945 0.88 0.634194
Target:  5'- uUAACUCCUAAGGCAUCaUUAuUAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUuAUUGU- -5'
28293 5' -43 NC_005902.1 + 48047 0.87 0.667945
Target:  5'- aUAACUCCUAAGGCAUCGUc---AGCAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAauuaUUGU- -5'
28293 5' -43 NC_005902.1 + 167210 0.87 0.679139
Target:  5'- uUAACUCCUAAGGCAUUGUUuacAACAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAuuaUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.