miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 111175 0.86 0.701375
Target:  5'- uUAACUCCUAAuGCGUUGUUGAUGACGc -3'
miRNA:   3'- -AUUGAGGAUUcCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 67196 0.86 0.72333
Target:  5'- uUAACUCCUAAGGCAUC---AAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 91072 0.86 0.72333
Target:  5'- uUAACUCCUAAGGCAUUaUUGAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 18519 0.86 0.73417
Target:  5'- uUAACUCCUAAGGCAUUaUUAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 148686 0.86 0.73417
Target:  5'- uUAACUCCUAAGGCAUCuc-GAUGACGc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 85685 0.85 0.755516
Target:  5'- -uACUCUUAAGGCAUCaUUGAUGACAg -3'
miRNA:   3'- auUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 79933 0.85 0.765998
Target:  5'- uUAACUCCUAAGGCAUCaUUAAU-GCAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAuUGU- -5'
28293 5' -43 NC_005902.1 + 81860 0.85 0.765998
Target:  5'- uUAACUCCUAAGGCGUUaUUGAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 26325 0.85 0.765998
Target:  5'- uUAACUCCUAAGGCAUCaucAAUGACGc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 184449 0.85 0.776335
Target:  5'- uUAACUCUUAAGGUGUUGUUAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 151252 0.85 0.776335
Target:  5'- uUAACUCCUAAGGUAUCaUUAAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 83801 0.85 0.790542
Target:  5'- uUAACUCCUAAGGCAUuaaugauguaaaacaUGUUGAUGAUAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUA---------------GCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 27734 0.84 0.796528
Target:  5'- uUAACUCCUAAGGCAucaUCGccGAUGGCAc -3'
miRNA:   3'- -AUUGAGGAUUCCGU---AGCaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 158406 0.84 0.796528
Target:  5'- uUAACUCCUAAGGCAucaUCGccGAUGGCAc -3'
miRNA:   3'- -AUUGAGGAUUCCGU---AGCaaUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 48078 0.84 0.80636
Target:  5'- uUAAUUCCUAAGGCAUCaUUAAUAAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGu -5'
28293 5' -43 NC_005902.1 + 54996 0.84 0.816002
Target:  5'- uUAACcCCUAAGGCAUCaUUAAUAACAc -3'
miRNA:   3'- -AUUGaGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 149858 0.84 0.816002
Target:  5'- aAACUCCUAAaaCAUCGUUGAUGACAa -3'
miRNA:   3'- aUUGAGGAUUccGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 15934 0.84 0.82544
Target:  5'- uUAAUUCCUGGGGUAUCaUUAAUAACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 48466 0.83 0.852436
Target:  5'- uUAGCUCCUAuGGCAUUaUUGAUAACAg -3'
miRNA:   3'- -AUUGAGGAUuCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 45108 0.83 0.852436
Target:  5'- uUAAUUCCUAAGGUAUUGUgucAAUGACAu -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGCAa--UUAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.