Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28293 | 5' | -43 | NC_005902.1 | + | 36906 | 0.72 | 0.999603 |
Target: 5'- uUAACUCCUAAGGCuaguauaGUgagcAUAACAa -3' miRNA: 3'- -AUUGAGGAUUCCGuag----CAau--UAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 86345 | 0.7 | 0.999967 |
Target: 5'- uUAAUUCCUAAGGCGUCauc---AACAa -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcaauuaUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 63172 | 0.71 | 0.999891 |
Target: 5'- uUAAUUCCUAAGGCAUCauc---AACAa -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcaauuaUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 18701 | 0.71 | 0.999857 |
Target: 5'- uUAAUUCCUAAaGCAUCaUUGAUAAUAa -3' miRNA: 3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 76028 | 0.72 | 0.999758 |
Target: 5'- uUAACUCCUAAGGUAUUaucAAUAAUg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcaaUUAUUGu -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 160824 | 0.72 | 0.999758 |
Target: 5'- uUAACUCa--AGGCGUUGUcAAUGACAc -3' miRNA: 3'- -AUUGAGgauUCCGUAGCAaUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 175547 | 0.72 | 0.999689 |
Target: 5'- uUAAUUCCUAAGGCAUUaucGAUAAUg -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcaaUUAUUGu -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 134646 | 0.72 | 0.999689 |
Target: 5'- uUAAUUCCUAAuGUGUUGUUAAUGAUAc -3' miRNA: 3'- -AUUGAGGAUUcCGUAGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 67291 | 0.72 | 0.999689 |
Target: 5'- uUAACUCCUAAaGCAUUaUUGAUAAUAc -3' miRNA: 3'- -AUUGAGGAUUcCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 43964 | 0.7 | 0.999976 |
Target: 5'- uUAACUUCgAAGGCAUCaucAAUAACAg -3' miRNA: 3'- -AUUGAGGaUUCCGUAGcaaUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 93921 | 0.7 | 0.999983 |
Target: 5'- uUAACUUUUAAGGUAUCaucAAUGACAu -3' miRNA: 3'- -AUUGAGGAUUCCGUAGcaaUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 113026 | 0.7 | 0.999988 |
Target: 5'- -----gUUAAGGCAUUGUUAAUGAUAc -3' miRNA: 3'- auugagGAUUCCGUAGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 91635 | 0.66 | 1 |
Target: 5'- uUAACUCuuuaCUAAGGUAUUaUUGAUAAUAc -3' miRNA: 3'- -AUUGAG----GAUUCCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 75032 | 0.67 | 1 |
Target: 5'- uUAACcUCUAAuGUAUUGUUAAUAACAc -3' miRNA: 3'- -AUUGaGGAUUcCGUAGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 122578 | 0.67 | 1 |
Target: 5'- aAAUUCUUAAgauGGCAUCGacgacgcaaagcaUUGAUAGCAa -3' miRNA: 3'- aUUGAGGAUU---CCGUAGC-------------AAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 103626 | 0.68 | 0.999999 |
Target: 5'- uUAACUCCUAAgauauuauugauguGGUGUUaUUGAUGACAc -3' miRNA: 3'- -AUUGAGGAUU--------------CCGUAGcAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 107247 | 0.68 | 0.999999 |
Target: 5'- uUAACUCUUAAGGUguuaucaacaaugcaAagcaUUGUUGAUAACAa -3' miRNA: 3'- -AUUGAGGAUUCCG---------------U----AGCAAUUAUUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 105956 | 0.69 | 0.999997 |
Target: 5'- -uACUCCUGAGGUA--GUUGAU-GCAu -3' miRNA: 3'- auUGAGGAUUCCGUagCAAUUAuUGU- -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 36758 | 0.69 | 0.999996 |
Target: 5'- ---aUCCUAAGGCAUCaucGAUGAUg -3' miRNA: 3'- auugAGGAUUCCGUAGcaaUUAUUGu -5' |
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28293 | 5' | -43 | NC_005902.1 | + | 24120 | 0.69 | 0.999991 |
Target: 5'- -uACcCCUAAGGUGUUaUUGAUGACAg -3' miRNA: 3'- auUGaGGAUUCCGUAGcAAUUAUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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