miRNA display CGI


Results 41 - 60 of 413 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 90609 0.68 1
Target:  5'- --gUUAACACCUAAGCU---UGCUg- -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAuguAUGAgu -5'
28294 3' -42.8 NC_005902.1 + 87126 0.68 1
Target:  5'- --gUUAAUAUUUAAGCUAUAUaugcACUCAu -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUA----UGAGU- -5'
28294 3' -42.8 NC_005902.1 + 48508 0.68 1
Target:  5'- --gUUAAUAUCUAAGCcAUAUACUUg -3'
miRNA:   3'- ggaAAUUGUGGAUUCGaUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 24306 0.68 1
Target:  5'- cUCUUUAACA-CUAGGCcaUACAcucuaUGCUCAu -3'
miRNA:   3'- -GGAAAUUGUgGAUUCG--AUGU-----AUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 8697 0.68 1
Target:  5'- --gUUAACACUUAuGCUAUAUACa-- -3'
miRNA:   3'- ggaAAUUGUGGAUuCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 31088 0.68 1
Target:  5'- cCUUUUAACACCcAAGCUAUgaacaaGUGCa-- -3'
miRNA:   3'- -GGAAAUUGUGGaUUCGAUG------UAUGagu -5'
28294 3' -42.8 NC_005902.1 + 90423 0.68 1
Target:  5'- aCUUUAACAUCUAAGUgUAUAUAUa-- -3'
miRNA:   3'- gGAAAUUGUGGAUUCG-AUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 151368 0.68 1
Target:  5'- uCCUUUAAauCCUaAAGCU-UAUACUCAu -3'
miRNA:   3'- -GGAAAUUguGGA-UUCGAuGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 31157 0.68 1
Target:  5'- cCCUUUAACuCCU---CUACAUGCUg- -3'
miRNA:   3'- -GGAAAUUGuGGAuucGAUGUAUGAgu -5'
28294 3' -42.8 NC_005902.1 + 139069 0.68 1
Target:  5'- -aUUUAAagaaUUAAGCUAUAUACUCAc -3'
miRNA:   3'- ggAAAUUgug-GAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 29570 0.68 1
Target:  5'- uUUUUAAUAUCcAAGCUAUAUAUUUAc -3'
miRNA:   3'- gGAAAUUGUGGaUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 130943 0.68 1
Target:  5'- cCCUUUAAauCCUaAAGCU-UAUACUCAu -3'
miRNA:   3'- -GGAAAUUguGGA-UUCGAuGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 175878 0.69 0.999998
Target:  5'- uUUUUAAUuuuauuauugACCUGAGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUUG----------UGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 127379 0.69 0.999998
Target:  5'- uCCUUUAAgacUACUUGuuCUAUAUACUCAc -3'
miRNA:   3'- -GGAAAUU---GUGGAUucGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 43526 0.69 0.999999
Target:  5'- cCUUUUAACAUCUAAcCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 95588 0.69 0.999997
Target:  5'- --gUUAACAUCUAAGUUAUAUAUaCAu -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUGaGU- -5'
28294 3' -42.8 NC_005902.1 + 15803 0.69 0.999997
Target:  5'- uCCUUUAACuCCUAAG--GCAUugUUAa -3'
miRNA:   3'- -GGAAAUUGuGGAUUCgaUGUAugAGU- -5'
28294 3' -42.8 NC_005902.1 + 148241 0.69 0.999998
Target:  5'- uCUUUUAACAUUUAAGCUuAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGA-UGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 23227 0.69 0.999999
Target:  5'- uUUUUAAC-CCUuaaAAGCUAUAUAUUCu -3'
miRNA:   3'- gGAAAUUGuGGA---UUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 178363 0.69 0.999999
Target:  5'- uUUUUAcucUACCUAAGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUu--GUGGAUUCGAUGUAUGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.