Results 21 - 40 of 413 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28294 | 3' | -42.8 | NC_005902.1 | + | 136367 | 0.67 | 1 |
Target: 5'- ------uUAUCUAAGCUACAUACa-- -3' miRNA: 3'- ggaaauuGUGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 15695 | 0.67 | 1 |
Target: 5'- aCUUUUAACACCUAAGauuUAUAgaCAa -3' miRNA: 3'- -GGAAAUUGUGGAUUCgauGUAUgaGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 134050 | 0.67 | 1 |
Target: 5'- --aUUAACuCCUAAGUUAUAUACa-- -3' miRNA: 3'- ggaAAUUGuGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 162808 | 0.67 | 1 |
Target: 5'- --gUUAAUAUCUAAGCuUGCAUauaGCUUAg -3' miRNA: 3'- ggaAAUUGUGGAUUCG-AUGUA---UGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 164701 | 0.67 | 1 |
Target: 5'- -aUUUAAUGCCUAAGCUAUAa----- -3' miRNA: 3'- ggAAAUUGUGGAUUCGAUGUaugagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 63098 | 0.67 | 1 |
Target: 5'- aCUUaAACACUUAAGCaAUAUACa-- -3' miRNA: 3'- gGAAaUUGUGGAUUCGaUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 18583 | 0.67 | 1 |
Target: 5'- --gUUAACuCCUAAGUUAUAUACa-- -3' miRNA: 3'- ggaAAUUGuGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 5045 | 0.67 | 1 |
Target: 5'- cCCUUUAACuCCUAAa--GCGUugUCAa -3' miRNA: 3'- -GGAAAUUGuGGAUUcgaUGUAugAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 103886 | 0.67 | 1 |
Target: 5'- cCCUUUAaauccuaaaguuuAUACCUGcuuGCUACAUucACUUAu -3' miRNA: 3'- -GGAAAU-------------UGUGGAUu--CGAUGUA--UGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 55129 | 0.67 | 1 |
Target: 5'- cCCUUUAAauCCUAAGCUAUAaACa-- -3' miRNA: 3'- -GGAAAUUguGGAUUCGAUGUaUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 112963 | 0.67 | 1 |
Target: 5'- cCCUUUAACACaUAAGUaAUAUACa-- -3' miRNA: 3'- -GGAAAUUGUGgAUUCGaUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 97050 | 0.67 | 1 |
Target: 5'- cUCUUUAACuCCUAAaGC-AUAUACUUAu -3' miRNA: 3'- -GGAAAUUGuGGAUU-CGaUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 90612 | 0.67 | 1 |
Target: 5'- ----aAACACCUAAGCUGUAUAUg-- -3' miRNA: 3'- ggaaaUUGUGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 23979 | 0.67 | 1 |
Target: 5'- uCCUUUAACAUCUAAaCUAUAUAa--- -3' miRNA: 3'- -GGAAAUUGUGGAUUcGAUGUAUgagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 101073 | 0.67 | 1 |
Target: 5'- cCCUUUAACAUCUAcaCUAUAUAUgaaCAa -3' miRNA: 3'- -GGAAAUUGUGGAUucGAUGUAUGa--GU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 139069 | 0.68 | 1 |
Target: 5'- -aUUUAAagaaUUAAGCUAUAUACUCAc -3' miRNA: 3'- ggAAAUUgug-GAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 24306 | 0.68 | 1 |
Target: 5'- cUCUUUAACA-CUAGGCcaUACAcucuaUGCUCAu -3' miRNA: 3'- -GGAAAUUGUgGAUUCG--AUGU-----AUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 48508 | 0.68 | 1 |
Target: 5'- --gUUAAUAUCUAAGCcAUAUACUUg -3' miRNA: 3'- ggaAAUUGUGGAUUCGaUGUAUGAGu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 8697 | 0.68 | 1 |
Target: 5'- --gUUAACACUUAuGCUAUAUACa-- -3' miRNA: 3'- ggaAAUUGUGGAUuCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 31088 | 0.68 | 1 |
Target: 5'- cCUUUUAACACCcAAGCUAUgaacaaGUGCa-- -3' miRNA: 3'- -GGAAAUUGUGGaUUCGAUG------UAUGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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