Results 21 - 40 of 413 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28294 | 3' | -42.8 | NC_005902.1 | + | 48380 | 0.96 | 0.330434 |
Target: 5'- cCCUUUAACACCUAAGUUAUGUACUUAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 91858 | 0.97 | 0.306688 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACa-- -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 136569 | 0.98 | 0.25642 |
Target: 5'- cCCUUUAACACCUAAGUUAUAUACUUAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 23257 | 1.03 | 0.141126 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUAUUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 80735 | 0.92 | 0.488996 |
Target: 5'- cUCUUUAACACCUAAGCUAUAUACa-- -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 50044 | 0.95 | 0.372954 |
Target: 5'- cCCUUUAACACCUAAGCUAUguucauuugcuAUGCUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUG-----------UAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 95945 | 0.97 | 0.299068 |
Target: 5'- cCCUUUAACACUUAAGUUAUAUACUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 167156 | 1.04 | 0.126083 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACUUAa -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 40968 | 0.95 | 0.372954 |
Target: 5'- cCCUUUAAUACCUAAGCUAUAUacACUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUA--UGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 99557 | 1.09 | 0.070887 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 47236 | 0.97 | 0.306688 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACa-- -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 50105 | 0.96 | 0.338645 |
Target: 5'- cCCUUugauccUAACACCUAAGCUACAUACUUAc -3' miRNA: 3'- -GGAA------AUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 13183 | 0.98 | 0.27709 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACcCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGaGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 41984 | 0.98 | 0.270056 |
Target: 5'- -gUUUAACACCUAAGCUAUAUACUCAc -3' miRNA: 3'- ggAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 145946 | 1.03 | 0.14925 |
Target: 5'- cCCUUUAACAUCUAAGCUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 34815 | 1.03 | 0.141126 |
Target: 5'- cCCUUUAACACCUAAGUUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 95764 | 0.91 | 0.54214 |
Target: 5'- cCUUUUAACACUUAAGCUAUAUAUUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 29090 | 0.92 | 0.488996 |
Target: 5'- uCCUUUAAUAUUUAAGCUAUAUACUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 97176 | 0.93 | 0.458302 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUAUg-- -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 97437 | 0.95 | 0.372954 |
Target: 5'- cCCUUUAACACCUAAGCUAUAcuUACUUAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGU--AUGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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