miRNA display CGI


Results 1 - 20 of 413 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 162390 1.13 0.041722
Target:  5'- cCCUUUAACACCUAAGCUACAUACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 95945 0.97 0.299068
Target:  5'- cCCUUUAACACUUAAGUUAUAUACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 91858 0.97 0.306688
Target:  5'- cCCUUUAACACCUAAGCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 78078 0.66 1
Target:  5'- uUUUUAACcCUUAAGCUAUAUAUg-- -3'
miRNA:   3'- gGAAAUUGuGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 34815 1.03 0.141126
Target:  5'- cCCUUUAACACCUAAGUUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 47184 1.03 0.14925
Target:  5'- aCCUUUAACACUUAAGCUAUAUACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 145946 1.03 0.14925
Target:  5'- cCCUUUAACAUCUAAGCUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 128773 1.02 0.162234
Target:  5'- cCCUUUAACACCUAAGCUAUAUACUUg -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 41984 0.98 0.270056
Target:  5'- -gUUUAACACCUAAGCUAUAUACUCAc -3'
miRNA:   3'- ggAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 54871 0.97 0.291595
Target:  5'- cCCUUUAACACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGuAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 184591 0.98 0.27709
Target:  5'- gCUUUAACACUUAAGCUAUAUACUCAc -3'
miRNA:   3'- gGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 136569 0.98 0.25642
Target:  5'- cCCUUUAACACCUAAGUUAUAUACUUAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 99557 1.09 0.070887
Target:  5'- cCCUUUAACACCUAAGCUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 13183 0.98 0.27709
Target:  5'- cCCUUUAACACCUAAGCUAUAUACcCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGaGU- -5'
28294 3' -42.8 NC_005902.1 + 167156 1.04 0.126083
Target:  5'- cCCUUUAACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 142155 0.99 0.230845
Target:  5'- cUCUUUAACACCUAAGCUAUAUACUUAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 45079 0.97 0.284269
Target:  5'- cCUUUUAACACCUAAGCUAUAUACUUAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 47236 0.97 0.306688
Target:  5'- cCCUUUAACACCUAAGCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 23257 1.03 0.141126
Target:  5'- cCCUUUAACACCUAAGCUAUAUAUUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 143019 1.03 0.14925
Target:  5'- cCCUUUAACAUCUAAGCUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.