Results 1 - 20 of 413 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28294 | 3' | -42.8 | NC_005902.1 | + | 162390 | 1.13 | 0.041722 |
Target: 5'- cCCUUUAACACCUAAGCUACAUACUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 120246 | 1.09 | 0.068846 |
Target: 5'- cCCUUUAACACCUGAGCUAUAUGCUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 143774 | 1.09 | 0.070887 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 99557 | 1.09 | 0.070887 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 71604 | 1.08 | 0.077364 |
Target: 5'- uCCUUUAACACCUAAGCUAUAUACUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 167156 | 1.04 | 0.126083 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACUUAa -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 23257 | 1.03 | 0.141126 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUAUUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 34815 | 1.03 | 0.141126 |
Target: 5'- cCCUUUAACACCUAAGUUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 143019 | 1.03 | 0.14925 |
Target: 5'- cCCUUUAACAUCUAAGCUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 47184 | 1.03 | 0.14925 |
Target: 5'- aCCUUUAACACUUAAGCUAUAUACUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 145946 | 1.03 | 0.14925 |
Target: 5'- cCCUUUAACAUCUAAGCUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 128773 | 1.02 | 0.162234 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACUUg -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 142155 | 0.99 | 0.230845 |
Target: 5'- cUCUUUAACACCUAAGCUAUAUACUUAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 136569 | 0.98 | 0.25642 |
Target: 5'- cCCUUUAACACCUAAGUUAUAUACUUAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 119009 | 0.98 | 0.263166 |
Target: 5'- cCCUUUAACuCCUAAGCUAUAUACUCAu -3' miRNA: 3'- -GGAAAUUGuGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 136046 | 0.98 | 0.270056 |
Target: 5'- cCCUUUAACuCCUAAGCUAUAUACUCAc -3' miRNA: 3'- -GGAAAUUGuGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 41984 | 0.98 | 0.270056 |
Target: 5'- -gUUUAACACCUAAGCUAUAUACUCAc -3' miRNA: 3'- ggAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 13183 | 0.98 | 0.27709 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUACcCAu -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUAUGaGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 184591 | 0.98 | 0.27709 |
Target: 5'- gCUUUAACACUUAAGCUAUAUACUCAc -3' miRNA: 3'- gGAAAUUGUGGAUUCGAUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 105265 | 0.97 | 0.284269 |
Target: 5'- cCCUUUAACACCUAAGCUAUAUacccACUCAc -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUA----UGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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