Results 1 - 20 of 413 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28294 | 3' | -42.8 | NC_005902.1 | + | 72828 | 0.66 | 1 |
Target: 5'- aCCUUUuaaACCUAuAGCUcCAUAUUCc -3' miRNA: 3'- -GGAAAuugUGGAU-UCGAuGUAUGAGu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 175939 | 0.66 | 1 |
Target: 5'- cCCUUUAACuCCUAAGgUAUcaucaacaAUGCUUu -3' miRNA: 3'- -GGAAAUUGuGGAUUCgAUG--------UAUGAGu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 156390 | 0.66 | 1 |
Target: 5'- uUCUUUAAUACUUAAaCUAUAUACa-- -3' miRNA: 3'- -GGAAAUUGUGGAUUcGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 137497 | 0.66 | 1 |
Target: 5'- cCCUUUAAUACCUAAaUUAUAUGaaCAa -3' miRNA: 3'- -GGAAAUUGUGGAUUcGAUGUAUgaGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 23416 | 0.66 | 1 |
Target: 5'- ---cUAACACauucAAGCUAUAUACUUg -3' miRNA: 3'- ggaaAUUGUGga--UUCGAUGUAUGAGu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 34713 | 0.66 | 1 |
Target: 5'- uCUUUUAACACCUAuaCUAUAUAUg-- -3' miRNA: 3'- -GGAAAUUGUGGAUucGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 25120 | 0.66 | 1 |
Target: 5'- cCCUUUAAC-UCUAuGCUAUAUAUaCAc -3' miRNA: 3'- -GGAAAUUGuGGAUuCGAUGUAUGaGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 78078 | 0.66 | 1 |
Target: 5'- uUUUUAACcCUUAAGCUAUAUAUg-- -3' miRNA: 3'- gGAAAUUGuGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 4775 | 0.66 | 1 |
Target: 5'- gUUUUAAC-CCUAcGCUAUAUACa-- -3' miRNA: 3'- gGAAAUUGuGGAUuCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 68959 | 0.66 | 1 |
Target: 5'- --gUUAAUACUUAAGCUAUAUAa--- -3' miRNA: 3'- ggaAAUUGUGGAUUCGAUGUAUgagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 1629 | 0.66 | 1 |
Target: 5'- --gUUAAUAUCUAAGUaAUAUACUUAu -3' miRNA: 3'- ggaAAUUGUGGAUUCGaUGUAUGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 136893 | 0.66 | 1 |
Target: 5'- -aUUUAACACCcAAGUUAUAUAUa-- -3' miRNA: 3'- ggAAAUUGUGGaUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 175613 | 0.66 | 1 |
Target: 5'- cCCUUUAAUACgUAAGCcgUAUACa-- -3' miRNA: 3'- -GGAAAUUGUGgAUUCGauGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 143643 | 0.66 | 1 |
Target: 5'- cCUUUUAACAUCUAAGUUAUAa----- -3' miRNA: 3'- -GGAAAUUGUGGAUUCGAUGUaugagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 76024 | 0.66 | 1 |
Target: 5'- cCCUUUAACuCCUAAGgUAUuaucaauaAUGCUUu -3' miRNA: 3'- -GGAAAUUGuGGAUUCgAUG--------UAUGAGu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 55129 | 0.67 | 1 |
Target: 5'- cCCUUUAAauCCUAAGCUAUAaACa-- -3' miRNA: 3'- -GGAAAUUguGGAUUCGAUGUaUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 103886 | 0.67 | 1 |
Target: 5'- cCCUUUAaauccuaaaguuuAUACCUGcuuGCUACAUucACUUAu -3' miRNA: 3'- -GGAAAU-------------UGUGGAUu--CGAUGUA--UGAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 5045 | 0.67 | 1 |
Target: 5'- cCCUUUAACuCCUAAa--GCGUugUCAa -3' miRNA: 3'- -GGAAAUUGuGGAUUcgaUGUAugAGU- -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 18583 | 0.67 | 1 |
Target: 5'- --gUUAACuCCUAAGUUAUAUACa-- -3' miRNA: 3'- ggaAAUUGuGGAUUCGAUGUAUGagu -5' |
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28294 | 3' | -42.8 | NC_005902.1 | + | 164701 | 0.67 | 1 |
Target: 5'- -aUUUAAUGCCUAAGCUAUAa----- -3' miRNA: 3'- ggAAAUUGUGGAUUCGAUGUaugagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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