miRNA display CGI


Results 1 - 20 of 413 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 1146 0.81 0.948329
Target:  5'- cCCUUUAAgACCUAAGCUGUAUACa-- -3'
miRNA:   3'- -GGAAAUUgUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 1203 0.78 0.983993
Target:  5'- --gUUAACACCUAAGUUAUAUACa-- -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 1262 0.78 0.981891
Target:  5'- cUCUUcAACACCUAGGCUAUAUAUa-- -3'
miRNA:   3'- -GGAAaUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 1408 0.78 0.987637
Target:  5'- aCCUuuUUAACcCCUAAGCUAUAUACg-- -3'
miRNA:   3'- -GGA--AAUUGuGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 1629 0.66 1
Target:  5'- --gUUAAUAUCUAAGUaAUAUACUUAu -3'
miRNA:   3'- ggaAAUUGUGGAUUCGaUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 1711 0.7 0.999987
Target:  5'- uUCUUUAAUAUCUAAGCUAUAUuaaacCUUu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAu----GAGu -5'
28294 3' -42.8 NC_005902.1 + 3024 0.9 0.574939
Target:  5'- --aUUAACAUCUAAGCUAUAUACUCAu -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 3077 0.83 0.880341
Target:  5'- -aUUUAACACCUAAGCUAUAUAUaCAc -3'
miRNA:   3'- ggAAAUUGUGGAUUCGAUGUAUGaGU- -5'
28294 3' -42.8 NC_005902.1 + 3363 0.7 0.999985
Target:  5'- uCUUUUAguuuuuaaaggguuACACCUAAGCUauACAUACa-- -3'
miRNA:   3'- -GGAAAU--------------UGUGGAUUCGA--UGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 4196 0.67 1
Target:  5'- cCUUUUAAUAUUUAAGCUAUAUAa--- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUgagu -5'
28294 3' -42.8 NC_005902.1 + 4611 0.87 0.74017
Target:  5'- uCCUUUAACAUCUAAGCgAUAUACUUAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGaUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 4775 0.66 1
Target:  5'- gUUUUAAC-CCUAcGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUUGuGGAUuCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 5045 0.67 1
Target:  5'- cCCUUUAACuCCUAAa--GCGUugUCAa -3'
miRNA:   3'- -GGAAAUUGuGGAUUcgaUGUAugAGU- -5'
28294 3' -42.8 NC_005902.1 + 5114 0.76 0.996295
Target:  5'- cUCUUUAACAUCUAAGCaAUAUAUUUg -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGaUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 5649 0.89 0.64159
Target:  5'- cCCUUUAACAaUUAAGCUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUgGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 6314 0.73 0.999682
Target:  5'- aUCUUUAAgACCUAAGCcAUAUACa-- -3'
miRNA:   3'- -GGAAAUUgUGGAUUCGaUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 7601 0.89 0.64159
Target:  5'- cCCUUUAACACCUAAaUUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 8111 0.7 0.999991
Target:  5'- aUUUUAAUAUaUAAGCUAUAUACUUg -3'
miRNA:   3'- gGAAAUUGUGgAUUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 8173 0.76 0.99485
Target:  5'- uCCU--AACAUUUAAGCUAUAUACUUg -3'
miRNA:   3'- -GGAaaUUGUGGAUUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 8416 0.72 0.999915
Target:  5'- uUUUUAACACCUAAaCUAUAUACa-- -3'
miRNA:   3'- gGAAAUUGUGGAUUcGAUGUAUGagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.