miRNA display CGI


Results 21 - 40 of 413 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 8697 0.68 1
Target:  5'- --gUUAACACUUAuGCUAUAUACa-- -3'
miRNA:   3'- ggaAAUUGUGGAUuCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 10387 0.83 0.895204
Target:  5'- cCCUUUAAUACUUAAaCUAUAUACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 11043 0.71 0.999974
Target:  5'- --gUUAACACUUAAGUUAUAUAUgaUCAu -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUG--AGU- -5'
28294 3' -42.8 NC_005902.1 + 11283 0.71 0.999952
Target:  5'- cUCUUUAACACUUAAGUgUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCG-AUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 11407 0.91 0.52062
Target:  5'- cUCUUUAACACUUAAGCUAUAUACUUg -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 11495 0.84 0.864432
Target:  5'- uUUUUAAUAUCUAAGCUAUAUACUUAc -3'
miRNA:   3'- gGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 12543 0.72 0.999887
Target:  5'- cCCUUUAAUACCUAAaUUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 12826 0.76 0.99485
Target:  5'- cCCUUUAACuCCUAAGUUAUAUAUa-- -3'
miRNA:   3'- -GGAAAUUGuGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 13183 0.98 0.27709
Target:  5'- cCCUUUAACACCUAAGCUAUAUACcCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGaGU- -5'
28294 3' -42.8 NC_005902.1 + 13398 0.75 0.997825
Target:  5'- aCCU--AAUACCUAAGCUAUAUAUg-- -3'
miRNA:   3'- -GGAaaUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 15150 0.84 0.856101
Target:  5'- cCUUUUAACAUgUAAGCUAUAUACUUAc -3'
miRNA:   3'- -GGAAAUUGUGgAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 15424 0.88 0.674928
Target:  5'- cUCUUUAACACCUAAGCUAUAUAUa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 15479 0.71 0.999982
Target:  5'- --gUUAAUGCUUAAGCUAUAUACa-- -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 15695 0.67 1
Target:  5'- aCUUUUAACACCUAAGauuUAUAgaCAa -3'
miRNA:   3'- -GGAAAUUGUGGAUUCgauGUAUgaGU- -5'
28294 3' -42.8 NC_005902.1 + 15803 0.69 0.999997
Target:  5'- uCCUUUAACuCCUAAG--GCAUugUUAa -3'
miRNA:   3'- -GGAAAUUGuGGAUUCgaUGUAugAGU- -5'
28294 3' -42.8 NC_005902.1 + 16465 0.76 0.995621
Target:  5'- cCUUUUAACACCUAAaCUAUAcACUCGc -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUaUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 16515 0.77 0.9892
Target:  5'- cCCUgUAACACCUGAGaUAUAUAgCUCAg -3'
miRNA:   3'- -GGAaAUUGUGGAUUCgAUGUAU-GAGU- -5'
28294 3' -42.8 NC_005902.1 + 16877 0.86 0.771442
Target:  5'- uCCUUUAACACCUAAGCUAUA---UCAa -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUaugAGU- -5'
28294 3' -42.8 NC_005902.1 + 16888 0.72 0.999852
Target:  5'- aCUUUUAACAUCUAAGCUAUgaACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGuaUGagu -5'
28294 3' -42.8 NC_005902.1 + 18583 0.67 1
Target:  5'- --gUUAACuCCUAAGUUAUAUACa-- -3'
miRNA:   3'- ggaAAUUGuGGAUUCGAUGUAUGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.