miRNA display CGI


Results 21 - 40 of 413 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 105265 0.97 0.284269
Target:  5'- cCCUUUAACACCUAAGCUAUAUacccACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUA----UGAGU- -5'
28294 3' -42.8 NC_005902.1 + 29610 0.97 0.291595
Target:  5'- cCCUUUAACAUUUAAGCUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 54871 0.97 0.291595
Target:  5'- cCCUUUAACACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGuAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 95945 0.97 0.299068
Target:  5'- cCCUUUAACACUUAAGUUAUAUACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 169124 0.97 0.299068
Target:  5'- cCCUUUAACACCUAAGCUAUAUAUUUg -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 63237 0.97 0.299068
Target:  5'- cCCUUUAACcCCUAAGCUAUAUACUCGg -3'
miRNA:   3'- -GGAAAUUGuGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 165888 0.97 0.306688
Target:  5'- cCCUUUAACACCUAAGCUAUAUACg-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 91858 0.97 0.306688
Target:  5'- cCCUUUAACACCUAAGCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 157229 0.97 0.306688
Target:  5'- cCCUUUAACACCUAAGCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 47236 0.97 0.306688
Target:  5'- cCCUUUAACACCUAAGCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 51674 0.96 0.314455
Target:  5'- cCUUUUAACACUUAAGCUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 146734 0.96 0.322371
Target:  5'- uCCUUUAACACCUAAGCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 118294 0.96 0.322371
Target:  5'- cCUUUUAACACUUAAGCUAUAUACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 169512 0.96 0.322371
Target:  5'- cUCUUUAACACCUGAGCUAUAUAuCUCAg -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAU-GAGU- -5'
28294 3' -42.8 NC_005902.1 + 48380 0.96 0.330434
Target:  5'- cCCUUUAACACCUAAGUUAUGUACUUAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 172606 0.96 0.330434
Target:  5'- cCCUUUAACACUUAAGCUAUAUACUUg -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 50105 0.96 0.338645
Target:  5'- cCCUUugauccUAACACCUAAGCUACAUACUUAc -3'
miRNA:   3'- -GGAA------AUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 146427 0.95 0.364159
Target:  5'- uCCUUUAACACCUAAGCUAUaauucacuAUGCUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUG--------UAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 149201 0.95 0.364159
Target:  5'- uUUUUAAUACCUAAGCUAUAUACUCAu -3'
miRNA:   3'- gGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 40968 0.95 0.372954
Target:  5'- cCCUUUAAUACCUAAGCUAUAUacACUCAc -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUA--UGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.