miRNA display CGI


Results 1 - 20 of 413 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 184862 0.91 0.54214
Target:  5'- cCCUUUAACACCUAAGCUguauAUAUGCUUg -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGA----UGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 184736 0.87 0.729506
Target:  5'- aCCUUaggaauuaauccUAACACCUGAGCUAUauAUACUCAu -3'
miRNA:   3'- -GGAA------------AUUGUGGAUUCGAUG--UAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 184591 0.98 0.27709
Target:  5'- gCUUUAACACUUAAGCUAUAUACUCAc -3'
miRNA:   3'- gGAAAUUGUGGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 182934 0.83 0.872514
Target:  5'- aUUUUAACACCUAAGCUAUAUAUgaaCAa -3'
miRNA:   3'- gGAAAUUGUGGAUUCGAUGUAUGa--GU- -5'
28294 3' -42.8 NC_005902.1 + 182565 0.87 0.707892
Target:  5'- aUUUUAACACCUAAGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 181227 0.85 0.791573
Target:  5'- gCCUUUAACuCCUAAGUUAUAUACUUg -3'
miRNA:   3'- -GGAAAUUGuGGAUUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 180884 0.71 0.999952
Target:  5'- cCCUUUAACAUCUAAGCaAUAUcACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGaUGUA-UGagu -5'
28294 3' -42.8 NC_005902.1 + 180827 0.85 0.811023
Target:  5'- aCCU--AACACCUAAGCgAUAUACUCAc -3'
miRNA:   3'- -GGAaaUUGUGGAUUCGaUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 180621 0.78 0.987637
Target:  5'- uUCUUUAACACCUAAGCuUAUAUGaaCAa -3'
miRNA:   3'- -GGAAAUUGUGGAUUCG-AUGUAUgaGU- -5'
28294 3' -42.8 NC_005902.1 + 180351 0.81 0.933159
Target:  5'- uUCUUUAACcCCUAAGCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGuGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 179811 0.94 0.419042
Target:  5'- cCCUUUAACAaCUAAGCUAUAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUgGAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 179696 0.86 0.781587
Target:  5'- uCCUUUAAaACCUAAGCUAUauAUACUCAu -3'
miRNA:   3'- -GGAAAUUgUGGAUUCGAUG--UAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 179474 0.79 0.977074
Target:  5'- --gUUAACACCUAAGUuauuuaUAUAUACUCAu -3'
miRNA:   3'- ggaAAUUGUGGAUUCG------AUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 178363 0.69 0.999999
Target:  5'- uUUUUAcucUACCUAAGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUu--GUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 177828 0.72 0.999852
Target:  5'- --aUUAACuuuGCCUAAGCUAUAUACa-- -3'
miRNA:   3'- ggaAAUUG---UGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 177590 0.74 0.999013
Target:  5'- cCUUUUAACACCUAAaCUAUuauuugauAUACUCAu -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUG--------UAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 177326 0.74 0.999359
Target:  5'- uCCUUUAACACCUAAGUUuauuuguauauaGCAUAa--- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGA------------UGUAUgagu -5'
28294 3' -42.8 NC_005902.1 + 175939 0.66 1
Target:  5'- cCCUUUAACuCCUAAGgUAUcaucaacaAUGCUUu -3'
miRNA:   3'- -GGAAAUUGuGGAUUCgAUG--------UAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 175878 0.69 0.999998
Target:  5'- uUUUUAAUuuuauuauugACCUGAGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUUG----------UGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 175613 0.66 1
Target:  5'- cCCUUUAAUACgUAAGCcgUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGgAUUCGauGUAUGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.