miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 163419 0.73 0.998839
Target:  5'- --cGUGaGUAaauauaUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aaaCACaCAU------AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 122673 0.73 0.998839
Target:  5'- -gUGaGUGUAUAGCUUAGaGaUGUUAAAg -3'
miRNA:   3'- aaACaCACAUAUCGAAUC-C-ACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 147630 0.73 0.99857
Target:  5'- -gUGaGUGUAUAGCUUAGaUGUUAAu -3'
miRNA:   3'- aaACaCACAUAUCGAAUCcACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 154952 0.74 0.99825
Target:  5'- ---uUGUucAUAGCUUGGGUGUUAAAa -3'
miRNA:   3'- aaacACAcaUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 169146 0.74 0.997746
Target:  5'- aUUUGUuUGauaugcuuacuugaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACAcAC--------------AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 34741 0.74 0.997126
Target:  5'- ----aGUGUAgcaacuaaauauauaUAGCUUAGGUGUUAAGa -3'
miRNA:   3'- aaacaCACAU---------------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 29255 0.74 0.996909
Target:  5'- ----aGUaUAUAGCUUAGGUGUUAGGa -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 135930 0.74 0.996909
Target:  5'- ----aGUaUGUAGCUUAGGUGUUAGGa -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 5415 0.74 0.996306
Target:  5'- cUUGUucauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 5212 0.74 0.996306
Target:  5'- --aGUGaGUAUAucGCUUAGGUGUUAGGu -3'
miRNA:   3'- aaaCACaCAUAU--CGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 3102 0.74 0.996306
Target:  5'- cUUGUucauaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aAACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 48608 0.74 0.996306
Target:  5'- ----aGUGUAUAGCUUAGaUGUUAAAa -3'
miRNA:   3'- aaacaCACAUAUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 125569 0.74 0.996306
Target:  5'- cUUGUuuauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 156822 0.74 0.996306
Target:  5'- cUUGUucauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28178 0.75 0.995535
Target:  5'- ----aGUGUAgcaagcaaauauaUAGCUUAGGUGUUAAAu -3'
miRNA:   3'- aaacaCACAU-------------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 45115 0.75 0.994811
Target:  5'- cUUGUucGUaUAUAGCUUAGGUGUUAu- -3'
miRNA:   3'- aAACA--CAcAUAUCGAAUCCACAAUuu -5'
28294 5' -42.7 NC_005902.1 + 20319 0.75 0.993897
Target:  5'- aUUUGUauaUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- -AAACAcacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 29485 0.75 0.993897
Target:  5'- --aGUGaGUAaauauaUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACaCAU------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 67389 0.76 0.991684
Target:  5'- --aGUGUGUAuaUAGCUUAaGUGUUAAAa -3'
miRNA:   3'- aaaCACACAU--AUCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 15505 0.76 0.991684
Target:  5'- --aGUGUauaUAUAGUUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACAc--AUAUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.